PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.5325s0070.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 249aa MW: 28467.4 Da PI: 9.7825 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.3 | 4e-14 | 21 | 65 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Bostr.5325s0070.1.p 21 RENWTEQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 65 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.72E-17 | 15 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.507 | 16 | 70 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-7 | 19 | 71 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.4E-18 | 19 | 68 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.9E-11 | 20 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-12 | 21 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.07E-9 | 23 | 66 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 249 aa Download sequence Send to blast |
MSFFEDPTKK IRKPYTITKS RENWTEQEHD KFLEALHLFD RDWKKIEAFV GSKTVIQIRS 60 HAQKYFLKVQ KNGTNEHLPP PRPKRKSNHP YPQKAPKCVA LTSSNALLQH DYLYSTNSQP 120 VISTAPKHGL VHCDVNTPNS VIQEKLGVPE NCCSTSSSRD KQRTPTVTET NDQESCGKPH 180 RVMPNFAEVY SFIGSVFDPK TTGHVQRLKQ MDPINLETVL LLIRNLSVNL RSPEFEEHRK 240 LISSYNAK* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.5325s0070.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ937211 | 0.0 | AJ937211.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like3 (lcl3 gene). | |||
GenBank | AY519508 | 0.0 | AY519508.1 Arabidopsis thaliana MYB transcription factor (At1g01520) mRNA, complete cds. | |||
GenBank | BT029347 | 0.0 | BT029347.1 Arabidopsis thaliana At1g01520 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010457115.1 | 1e-169 | PREDICTED: protein REVEILLE 3-like | ||||
Swissprot | Q6R0H0 | 1e-162 | RVE3_ARATH; Protein REVEILLE 3 | ||||
TrEMBL | R0GTE5 | 1e-168 | R0GTE5_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.5325s0070.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1290 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01520.1 | 1e-164 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.5325s0070.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|