PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.5022s0060.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | GeBP | ||||||||
Protein Properties | Length: 366aa MW: 42416.4 Da PI: 10.5513 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 94 | 1.6e-29 | 172 | 270 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqk 87 lf r +seeDe+vlL + df+a+ g +p+++idafyefvk+sisf+++k+qlv+Kir+L++Kf +k k ++++++fsk+ d+ Bostr.5022s0060.1.p 172 LFARKFSEEDEVVLLERIFDFTATGG-NPTENIDAFYEFVKNSISFDATKDQLVTKIRNLRRKFDEKILKshenGIKEDQIVFSKAFDRR 260 6899*****************76655.*************************************99987755446678999********* PP DUF573 88 ifelskkiWg 97 +f+ls+kiWg Bostr.5022s0060.1.p 261 CFDLSRKIWG 270 *********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 5.9E-27 | 173 | 270 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MDKERYSRSH RDDRDRDRDR DSSPDHPLRR EGGRRRDRDG DSKRRNSNHE RDRTKDRARD 60 RGRSVERGER EGSRDRDHER SHEGSKEKEA RKSNSSDEES EPVAESKKEE SFKTPAKTSV 120 VSKPSGSKTT TKPSHVVTLP AKRSLEKTEK VSRKKPTSKE DVKNEEKPKQ NLFARKFSEE 180 DEVVLLERIF DFTATGGNPT ENIDAFYEFV KNSISFDATK DQLVTKIRNL RRKFDEKILK 240 SHENGIKEDQ IVFSKAFDRR CFDLSRKIWG PDGVLPSKKM RQGQLGRRVK DDEDEKPKRH 300 AYISTPLSFG LDKVKDGPKK REFGERLKKM NAKQAELCMK RIGFMNDVAT LIFKRDKTSS 360 SSVLK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.5022s0060.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010474628.1 | 4e-87 | PREDICTED: probable transcription factor At4g01260 | ||||
Swissprot | O04608 | 8e-71 | STKLR_ARATH; Probable transcription factor At4g01260 | ||||
TrEMBL | R0G095 | 1e-81 | R0G095_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.5022s0060.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19132 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01260.1 | 3e-73 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Bostr.5022s0060.1.p |