PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.28794s0018.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TALE
Protein Properties Length: 462aa    MW: 52266.8 Da    PI: 7.627
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.28794s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.41.2e-082773141954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yp   ++  LA+++gLt++qV++WF N R +
  Bostr.28794s0018.1.p 277 FEHflHPYPRDVDKVMLARETGLTKSQVSNWFINARVR 314
                           5544589*****************************87 PP
2BELL112.23e-36158228272
                  BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           rqel++kkakL+s++e+V++rYkqy++q+qt+issFe+++glgsa+pYt++Al++iS++Fr +kd+i+ qi
  Bostr.28794s0018.1.p 158 RQELEMKKAKLISMVEKVEQRYKQYHDQVQTIISSFEQAVGLGSANPYTHMALQTISKQFRVVKDKICLQI 228
                           79******************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.7E-5896226IPR006563POX domain
PfamPF075266.4E-36107224IPR006563POX domain
PROSITE profilePS5007111.726255318IPR001356Homeobox domain
CDDcd000862.29E-10258319No hitNo description
SMARTSM003897.7E-8258322IPR001356Homeobox domain
SuperFamilySSF466892.55E-16259324IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-26261322IPR009057Homeodomain-like
PfamPF059203.5E-17275314IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MSDDHRKQRE RHVEEDNGKL IFLIIMAAFV HGESDMREPS SDLFMMNMNQ FPEPTTTTNA  60
HNHHFYNLCF GSQQHGPRDE VDHIEQGNSS ISTFSNGGVF RALAPIYLKA AQELLNEIVN  120
VGNGSHGAKQ ERRVSKESAI YGNGDIIGGH KPGVAAYRQE LEMKKAKLIS MVEKVEQRYK  180
QYHDQVQTII SSFEQAVGLG SANPYTHMAL QTISKQFRVV KDKICLQIKH INKLLGKKEC  240
DEQLKQLGKM AHHHSNAWRP QRGLPEKAVF VLRSWLFEHF LHPYPRDVDK VMLARETGLT  300
KSQVSNWFIN ARVRVWKPMV EELYLGEINI EESRKGSNPN EHSTKGSSSK QPYNNTTSDE  360
SSNSILPAFH QGFIENENPM QNSSSSCSVV RFRKQHMNQT SFIHFNGGFE NYHTMVGNGV  420
SLSLGLPHSC DQTFTNIEFG LTSHGTEISG IYPSSTYQIM D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15264322563Homeobox protein Meis2
3k2a_B2e-15264322563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.28794s0018.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0565430.0DQ056543.1 Arabidopsis thaliana homeodomain-containing protein (At2g27220) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010510795.10.0PREDICTED: BEL1-like homeodomain protein 5 isoform X1
RefseqXP_010510797.10.0PREDICTED: BEL1-like homeodomain protein 5 isoform X1
SwissprotQ8S8970.0BLH5_ARATH; BEL1-like homeodomain protein 5
TrEMBLR0FW020.0R0FW02_9BRAS; Uncharacterized protein
STRINGBostr.28794s0018.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147491418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27220.10.0BEL1-like homeodomain 5