PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.27991s0074.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | LBD | ||||||||
Protein Properties | Length: 237aa MW: 25924.3 Da PI: 5.0857 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.8 | 8e-43 | 54 | 153 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q+++ Bostr.27991s0074.1.p 54 PCAACKILRRRCAEKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARIRDPVYGCAGAIYHLQRQVSE 142 7**************************************************************************************** PP DUF260 90 lkaelallkee 100 l+a+la+++ e Bostr.27991s0074.1.p 143 LQAQLAKTQVE 153 ******99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.332 | 53 | 154 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-42 | 54 | 151 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MLKMEINGGV ATPTASAVAV TAVKETTTPV SSPSPTSSPP SPKQPPQTPV VLSPCAACKI 60 LRRRCAEKCV LAPYFPPTDP AKFTIAHRVF GASNIIKFLQ ELPESQRTDA VNSMVYEAGA 120 RIRDPVYGCA GAIYHLQRQV SELQAQLAKT QVELVGMQLQ RSSLLELIYK MEQTKLSAQE 180 QGQHKMSFES SFESGDEFIS SPDEESNDLG FLEDSNNNNN NINNNSSMSW WDPLWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-42 | 46 | 155 | 3 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-42 | 46 | 155 | 3 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.27991s0074.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473840 | 0.0 | AB473840.1 Arabidopsis thaliana ASL7 mRNA for ASYMMETRIC LEAVES2-like 7 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_180417.2 | 1e-137 | LOB domain-containing protein 11 | ||||
Swissprot | Q9SK08 | 1e-138 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | R0FXT9 | 1e-135 | R0FXT9_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.27991s0074.1.p | 1e-177 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1141 | 28 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 1e-109 | LOB domain-containing protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.27991s0074.1.p |