PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26959s0261.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 251aa    MW: 28741.4 Da    PI: 6.166
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26959s0261.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.55e-22103163259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dg++WrKYGqK +k s++ r YYrCt+a   +C+++k+v++ +++p v  +tY g H ++
  Bostr.26959s0261.1.p 103 NDGFAWRKYGQKIIKTSPHQRCYYRCTYAkdqNCNATKRVQKIKDNPPVYRTTYVGIHVCK 163
                           7***************************99999*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081119.31397160IPR003657WRKY domain
SuperFamilySSF1182902.88E-22100163IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.3E-23100163IPR003657WRKY domain
SMARTSM007749.1E-33102164IPR003657WRKY domain
PfamPF031062.7E-22103163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MFSNIDHKAV TALLHGQGCA YSLKKLFENR EISSVSTEPL INTILDSFSL ALSFMDFPNP  60
PPHHESSFIN IAGHVPQRSS KKKLCGAEGL VYYRDDSPTL CPNDGFAWRK YGQKIIKTSP  120
HQRCYYRCTY AKDQNCNATK RVQKIKDNPP VYRTTYVGIH VCKKDFALHD DTYGSEMIQY  180
DKVVSESVMP QLTRIDHQAI TMEEEDTNHI MNQECDIYDY LVNDDQSWAN QFLPFPSVDP  240
MFFDNIPSFD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-16103163969OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26959s0261.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001117559.11e-135WRKY DNA-binding protein 67
SwissprotQ93WV71e-133WRK67_ARATH; Probable WRKY transcription factor 67
TrEMBLA0A178W9L21e-135A0A178W9L2_ARATH; WRKY67
STRINGBostr.26959s0261.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66550.21e-138WRKY DNA-binding protein 67