PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26675s0284.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 742aa    MW: 82488.6 Da    PI: 8.6851
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26675s0284.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54e-07264284425
                           ---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                           ++Crff ++G+C+ G++C+F+H
  Bostr.26675s0284.1.p 264 VPCRFF-ASGYCRNGNNCRFSH 284
                           689955.55************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.385260288IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4261286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6263285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4265285IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4265284IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MSGSGRKRVS KWDTKEEDSQ HLSGLDYTGK SGSFFCDNDP EHARFYPEGN GRNGSRRAGL  60
DDDDEHLKSR QHSGEAWPSR SRVSHDDGDA MMGYYDDPRN SSEQDESRQQ YFRQSTSRDR  120
ARTRRSGSGS RSNSRSRSRS QSPLQRVRRD GGGSYDRHKT RARGSPRSGR EFDGRYNRAG  180
GYDWEGNNRK TRDTKYYTED SGEQQPVRVG GRTDYSSGFP EDNTNSRREN PDQILRNYRN  240
EAARERETHR RDVPEGEFHR SSNVPCRFFA SGYCRNGNNC RFSHHGAPSA RGSPERKPQD  300
EMYSRHDNNN HSGTTERMRN SHRWNDVERS DAGKSSEVQI SRVSKGMSDA KGNNSSWIDD  360
MEMSPDWNYG VKTLKKPVNE EHGGISQSSQ SRVLKDTLAP AYEHGVASIA QQDGNRRSVG  420
MFSTVGEKTV ASSHHNNFSN NLANSAPPVQ AFNQNIENHS AVPYQSTPLA VGGNQVLLPA  480
ATNLPGGLNS SNLENGNAQN TVSREELNHI SNISASLAQF FGNGQPIPHL HSTLNPKQAM  540
QVPEVYGDKE QSSHTQSGLL SNNSIQTGGV PAVPALQINN SEAQQVQIPK YLVSLAVNPK  600
ASSEENRDKK TDEEASKKPD GKKTGEEEDT AEDAENVVEE EEDDGAGDEN NKKEKDPKGM  660
RAFKFALVEI VKELLKPAWK EGGMNKEAYK NIVKKVVDKV TGAIQTGNIP QTQEKIDHYL  720
SASKSKLTKL VQAYVSKVKK S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26675s0284.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0844144e-32AC084414.2 Arabidopsis thaliana chromosome 1 BAC F27K7 genomic sequence, complete sequence.
GenBankCP0026844e-32CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306863.10.0zinc finger CCCH domain-containing protein 38
SwissprotQ9LIH50.0C3H38_ARATH; Zinc finger CCCH domain-containing protein 38
TrEMBLR0GVC10.0R0GVC1_9BRAS; Uncharacterized protein
STRINGBostr.26675s0284.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91601215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-17C3H family protein