PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26675s0265.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 339aa    MW: 38434.9 Da    PI: 4.6145
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26675s0265.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.73.9e-1583130152
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                           sg+kGVr+++ +g+++AeIr p e   +kr +lg+f t+ eAa+a+ + +++
  Bostr.26675s0265.1.p  83 SGFKGVRRRP-WGKYAAEIRNPFE---KKRLWLGTFPTEAEAAEAYQRSKRE 130
                           79********.**********644...5**********99******877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.36E-1583131IPR016177DNA-binding domain
PfamPF008471.6E-983125IPR001471AP2/ERF domain
CDDcd000182.87E-2083126No hitNo description
SMARTSM003801.5E-1684144IPR001471AP2/ERF domain
PROSITE profilePS5103219.09884141IPR001471AP2/ERF domain
PRINTSPR003675.1E-88596IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-1985131IPR001471AP2/ERF domain
PRINTSPR003675.1E-8107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MIKEVNVDLS LIKTVNVICK DPYATDSSSD DEAISGNNPC RQIKPKSPKR HISKICVPSL  60
IKRYENVSKS TGNKATGNRK SSSGFKGVRR RPWGKYAAEI RNPFEKKRLW LGTFPTEAEA  120
AEAYQRSKRE FDERLGLVKS EVDVVDLTKP CGARKRKEKE VESTRSSVLT RSKNGKKTKK  180
STVVEKTFGC GYVDEEEGSI DKMLEDPLMT WSISDIFRDS VVESNDIWVD DNPAEFNSIF  240
DDLKLDLLED DTIGKEKTFG FKTGDNTVVN QHAEIVTTIA NIFDDDTDLF EFDRLTDDFR  300
LEDFPMDDFR LEDFPMDDFG LLGEAEVDDY SWFNGTTD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153158RKRKEK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26675s0265.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0160411e-159AC016041.5 Genomic sequence for Arabidopsis thaliana BAC F27J15 from chromosome I, complete sequence.
GenBankAY5608401e-159AY560840.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g49120) mRNA, complete cds.
GenBankCP0026841e-159CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891477.11e-148ethylene-responsive transcription factor ERF117
SwissprotQ9M9B21e-149EF117_ARATH; Ethylene-responsive transcription factor ERF117
TrEMBLA0A178WIZ61e-159A0A178WIZ6_ARATH; CRF9
STRINGBostr.26675s0265.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM165471013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49120.11e-140ERF family protein