PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26527s0378.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 115aa    MW: 13393 Da    PI: 5.2698
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26527s0378.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.68.2e-09268636103
                   NAM  36 evdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103
                           + diy  ePw+L      ++++++fF++ ++     kr+nr++k   Wkatg+ k+++sk++ + g  
  Bostr.26527s0378.1.p  26 KDDIYAKEPWQLS-----HTENVFFFFEPNEWFYLVKRTNRKVK--GWKATGELKDIVSKNTVEGGKS 86 
                           569*********7.....34555555555555556799***877..5************655443333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023651.2E-4597IPR003441NAC domain
SuperFamilySSF1019417.72E-167111IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MVEEFYAEEE ELVGFRFNPS EDNRDKDDIY AKEPWQLSHT ENVFFFFEPN EWFYLVKRTN  60
RKVKGWKATG ELKDIVSKNT VEGGKSKTSG WTMTEYSPIG KSFQNQVLCH LKGP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26527s0378.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_197331.15e-40NAC domain containing protein 88
TrEMBLA0A178UJG93e-40A0A178UJG9_ARATH; NAC088
STRINGBostr.26527s0378.1.p3e-80(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14744821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.11e-43NAC domain containing protein 88