PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26527s0049.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 342aa    MW: 38381.4 Da    PI: 5.1868
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26527s0049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.93.5e-48231482128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                            pGf+F+P+d el+++yLk+k++g + ++ evi++++iy++ePwdLp k++ ++++ew+fF+ r kky++g++++ratk gyWkatgk+
  Bostr.26527s0049.1.p  23 FPGFKFSPNDVELISYYLKRKMDGLERSV-EVIPDAHIYNFEPWDLPdKSIVKSDSEWFFFCARGKKYPHGSQNRRATKMGYWKATGKE 110
                           69************************999.99***************778888899********************************* PP

                   NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++v+s ++e++g+k+tLvf+ grapkge+tdW+mhey +
  Bostr.26527s0049.1.p 111 RDVKS-GSEVIGTKRTLVFHIGRAPKGERTDWIMHEYCM 148
                           *****.9******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-5411164IPR003441NAC domain
PROSITE profilePS5100551.03222165IPR003441NAC domain
PfamPF023653.1E-2424147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009626Biological Processplant-type hypersensitive response
GO:0009910Biological Processnegative regulation of flower development
GO:0034976Biological Processresponse to endoplasmic reticulum stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEAEAVGAYK ATTAASVEAS TVFPGFKFSP NDVELISYYL KRKMDGLERS VEVIPDAHIY  60
NFEPWDLPDK SIVKSDSEWF FFCARGKKYP HGSQNRRATK MGYWKATGKE RDVKSGSEVI  120
GTKRTLVFHI GRAPKGERTD WIMHEYCMKG VSLDDAMVVC RVRRNNEYHS GTSQKTPQPN  180
LAAEKHVTLQ NGATSSGSPS DWDNLVDFYL ADESGEKLLA EMAESSENLQ VHNEEDFFAD  240
ILRDEIINLD EAVMTGNTPN EVPTLESASM EIRVLPLPNM IDKQMSSLLE ERPSQKKKGQ  300
DTRESLSNCF VGLYSIKTVN KSRWDVVIAL VALIAMLVYL E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-392416619166NO APICAL MERISTEM PROTEIN
1ut4_B5e-392416619166NO APICAL MERISTEM PROTEIN
1ut7_A5e-392416619166NO APICAL MERISTEM PROTEIN
1ut7_B5e-392416619166NO APICAL MERISTEM PROTEIN
3swm_A5e-392416622169NAC domain-containing protein 19
3swm_B5e-392416622169NAC domain-containing protein 19
3swm_C5e-392416622169NAC domain-containing protein 19
3swm_D5e-392416622169NAC domain-containing protein 19
3swp_A5e-392416622169NAC domain-containing protein 19
3swp_B5e-392416622169NAC domain-containing protein 19
3swp_C5e-392416622169NAC domain-containing protein 19
3swp_D5e-392416622169NAC domain-containing protein 19
4dul_A5e-392416619166NAC domain-containing protein 19
4dul_B5e-392416619166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26527s0049.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3856850.0AF385685.1 Arabidopsis thaliana AT5g22290/MWD9_7 mRNA, complete cds.
GenBankAY0780060.0AY078006.1 Arabidopsis thaliana AT5g22290/MWD9_7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288125.10.0NAC domain-containing protein 89
SwissprotQ94F580.0NAC89_ARATH; NAC domain-containing protein 89
TrEMBLR0HBJ40.0R0HBJ4_9BRAS; Uncharacterized protein
STRINGBostr.26527s0049.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.10.0NAC domain containing protein 89
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]