PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25463s0088.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 365aa    MW: 42200.4 Da    PI: 8.8673
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25463s0088.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013115138123
                           EEETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                           y C+ C+++F +++ L +H +  H
  Bostr.25463s0088.1.p 115 YFCGVCDRRFYTNEKLINHFKQiH 138
                           78*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10102.9E-633115IPR029060PIN domain-like
SuperFamilySSF576677.1E-5114140No hitNo description
PROSITE profilePS5015710.866115143IPR007087Zinc finger, C2H2
PROSITE patternPS000280117138IPR007087Zinc finger, C2H2
CDDcd061679.20E-13181267No hitNo description
PfamPF019361.4E-7186268IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10102.9E-6200268IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MFSRFIQRIW RPKTQITSLN SIKGFSFSSI NPKPQIRVAV FWDLDNKPPA SFPPYDAAVK  60
LRTAASSFGF VKLMVAYANR HAFSYVPLEV REERKDRKLL NQLENKGLVK PPEPYFCGVC  120
DRRFYTNEKL INHFKQIHET ENQKRMRQIE SSKGHQRVRL VAKYSMKIDK YKRAARKIMT  180
PKEGYGLADE LKRAGFWVKM VSDKPEAADK ALKEHMVDMM DKREVECVVL VSDDSGFAEI  240
LWEAKERCLR TVVIGDLNEG ALKRVADVAY SWKEVVMGKA KKEVEKVVGK WKDRDVLKKL  300
EWTYDPALEK ERGGSCGVWD YEFDYNYDEI ENVTEVEPVE IGDGGDWWKI DDNEDSVGSS  360
RPCQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25463s0088.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1189360.0AK118936.1 Arabidopsis thaliana At4g12240 mRNA for unknown protein, complete cds, clone: RAFL21-27-H22.
GenBankAL0803180.0AL080318.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T4C9 (ESSA project).
GenBankAL1615330.0AL161533.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 33.
GenBankBT0054090.0BT005409.1 Arabidopsis thaliana clone U51152 unknown protein (At4g12240) mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020877699.10.0uncharacterized protein LOC9308716
TrEMBLD7M0Z20.0D7M0Z2_ARALL; Zinc finger family protein
STRINGBostr.25463s0088.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.10.0C2H2 family protein