PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13671s0422.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 174aa    MW: 20071.4 Da    PI: 10.8947
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13671s0422.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.32e-061663254
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                          r+  n rE+ RR r+++ f+ L +++ +      ++l   +   +A+ YI +L
  Bostr.13671s0422.1.p 16 RKQRNLREKERRMRMKHLFSILSSHVSPT-----RRLPVPQLMDQATAYIIQL 63
                          7889**********************997.....7999999999999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.81E-41267No hitNo description
SuperFamilySSF474595.23E-121287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.0521463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-61677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00252069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MDRAREIGEG SSSSLRKQRN LREKERRMRM KHLFSILSSH VSPTRRLPVP QLMDQATAYI  60
IQLKEKLNYL KEKKRTLLQG GLGNLYEGSF LQPKLSIRSR ASTIEMNLII DLNMKRVMLH  120
ELVSIFEEEG AQVMSGNLQN FNDRTIYTII AQAIISRIGF DPSRIEDRVR KLI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025LREKER
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13671s0422.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3168611e-142AK316861.1 Arabidopsis thaliana AT1G10585 mRNA, partial cds, clone: RAFL05-21-F23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_563873.21e-107basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotF4I4E11e-108BH167_ARATH; Transcription factor bHLH167
TrEMBLA0A178WJI71e-105A0A178WJI7_ARATH; Uncharacterized protein
STRINGBostr.13671s0422.1.p1e-122(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.11e-100bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]