PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13175s0042.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 355aa    MW: 40259.6 Da    PI: 5.722
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13175s0042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-12192235654
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            ++ErrRR+r+N++++ Lr+++Pk      +K++  +iL  A++Y+k+L
  Bostr.13175s0042.1.p 192 LMAERRRRKRLNDRLSMLRSIVPKI-----TKMDRTSILGDAIDYMKEL 235
                           589*********************7.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.663186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-16189253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-10192235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.77E-5193235No hitNo description
Gene3DG3DSA:4.10.280.104.6E-16193250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MHYINNGPSS LTQTHKALFT CTLTKNREFQ KQREREMEME LTQLNKQESN NLDGVKGGFI  60
AMDQFVPNDW NFDYLCFNST LEETDNIDHP SSSFLMNLIS QPPPLLHQPP QPLSPPPPSP  120
PLFSAFDYPF LENIRDSSYY PPPLILPTSQ ENNNNNNNYA PLMVESKSFV STGVINKKKS  180
NKKLEGQPSK NLMAERRRRK RLNDRLSMLR SIVPKITKMD RTSILGDAID YMKELLDKIN  240
KLQEDEQELG SNSHLNNLIT NESMARNSLK FEVDQREVDT HINICCSTKP GLLLSTVSTL  300
ENLGLEIQQC VISCFSDFSL QASCSEVVEQ RDFVTSEDTK QALIRNAGYG GRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176198KKKSNKKLEGQPSKNLMAERRRR
2194201ERRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13175s0042.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885940.0AF488594.1 Arabidopsis thaliana clone bHLH061 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019097657.10.0PREDICTED: transcription factor bHLH61-like isoform X2
SwissprotQ9LXA91e-177BH061_ARATH; Transcription factor bHLH61
TrEMBLA0A178UKE21e-176A0A178UKE2_ARATH; Uncharacterized protein
STRINGBostr.13175s0042.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.11e-171bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]