PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.12659s0337.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 463aa    MW: 51811 Da    PI: 9.6196
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.12659s0337.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00076406428123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++Cp+C ++F++   L  H r+H
  Bostr.12659s0337.1.p 406 HECPICFRVFKSGQALGGHKRSH 428
                           79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.4E-5532IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.01E-5534No hitNo description
SMARTSM003550.72931IPR015880Zinc finger, C2H2-like
PfamPF139120.0042932IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076936IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.07690118IPR007087Zinc finger, C2H2
SMARTSM003553.491113IPR015880Zinc finger, C2H2-like
PfamPF139124.3E-491115IPR007087Zinc finger, C2H2
SuperFamilySSF576671.66E-692113No hitNo description
PROSITE patternPS00028092113IPR007087Zinc finger, C2H2
SuperFamilySSF576671.66E-6401428No hitNo description
PROSITE profilePS501578.974406428IPR007087Zinc finger, C2H2
SMARTSM003550.14406428IPR015880Zinc finger, C2H2-like
PfamPF139124.0E-10406428IPR007087Zinc finger, C2H2
PROSITE patternPS000280408428IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MEEFKERKFV CRFCSKRFAC GKSLGGHVRT HMMNENSLDS DEDESNKLKM IDENGGQSSY  60
GLRENPKKNK RFVDHRQMMA LKQQQQHQQL RCCRECGKGF VSSKALCGHM ACHSEREKIV  120
MDSQSDTEAS SSPIRRRSKR VVVKHRHKAA FVVGGNGIMN QSNSASSDAS EIEPEQEEIA  180
LSLMMLSRDS SFKKGHNLMV NSLAESSDNN SVILETKSSS GEQLKMFNVK NVEDFSKNNK  240
LGVDNQVRSG EDNGDILYDS DNSDSGYFRN GPKKLDSDVS VDGFLRNTGF DNKAVMVSRS  300
GFNSSATKQD KNLNRFRKEW YKEGGSGSGS GSGRSSTKYD LRKSKRGFPS YGRKKIKYEF  360
NESVYDSGEH SLETDSCADT NRTIKIHSKS PMVKKASGAK KKSKGHECPI CFRVFKSGQA  420
LGGHKRSHFI GNQEHRTLVI QHQVAHEMHT LIDLNLPAPI DE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.12659s0337.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT1K70.0AC013427.3 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306284.10.0uncharacterized protein LOC17900354
TrEMBLR0GTA20.0R0GTA2_9BRAS; Uncharacterized protein
STRINGBostr.12659s0337.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.10.0C2H2-like zinc finger protein