PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.11214s0004.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 318aa    MW: 35405.6 Da    PI: 10.3923
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.11214s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.85.4e-29250307359
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           D+y+WrKYGqK++kgs +pr YY+C+s  gCp++k+v+r+ ++ +++++tYegeHnh 
  Bostr.11214s0004.1.p 250 DEYSWRKYGQKPIKGSLHPREYYKCSSVrGCPARKHVKRCVDESSMLIVTYEGEHNHA 307
                           9*************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.2E-10209245IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.0E-31236307IPR003657WRKY domain
PROSITE profilePS5081126.647243309IPR003657WRKY domain
SuperFamilySSF1182901.7E-25246307IPR003657WRKY domain
SMARTSM007742.5E-33248308IPR003657WRKY domain
PfamPF031061.4E-25250306IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MKEVEAANKA AMESCHSMLN LLSQQTNDSK SIMVETREVV YKFKRVSSLL SRGLGQKKIK  60
KLDNNKYKFS SSLLPQHMFL ESPICSANAI SGCISVPAPK PLQIKMCVDK SFLELKPPSS  120
RVVDPKPYQF IHNHQQRVYS RSNSGLNLKF DGSGGGGCYS PSMSNGSRSF VSSLSIDGSV  180
TDYDKNSFHL IGLPQGSDHM SQHSRRTSCS GSLKCGSRSK FHCSKKRKLR VKRSIKVSAI  240
SNRIANIPPD EYSWRKYGQK PIKGSLHPRE YYKCSSVRGC PARKHVKRCV DESSMLIVTY  300
EGEHNHARIP SSQSTHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-17236310275WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.11214s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4262550.0AF426255.1 Arabidopsis thaliana WRKY transcription factor 74 (WRKY74) mRNA, complete cds.
GenBankAF4423980.0AF442398.1 Arabidopsis thaliana WRKY transcription factor 74 (WRKY74) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_198217.10.0WRKY DNA-binding protein 74
SwissprotQ93WU60.0WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A178UCL60.0A0A178UCL6_ARATH; WRKY74
STRINGBostr.11214s0004.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38852359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.10.0WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]