PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.10199s0156.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | C2H2 | ||||||||
Protein Properties | Length: 372aa MW: 41717 Da PI: 8.4206 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 23.2 | 1.7e-07 | 212 | 234 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F+r nL+ H+r H Bostr.10199s0156.1.p 212 HYCQICGKGFKRDANLRMHMRAH 234 68*******************99 PP | |||||||
2 | zf-C2H2 | 10.9 | 0.0014 | 333 | 348 | 6 | 21 |
TTEEESSHHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHir 21 Cg+ Fsrk+ L +H + Bostr.10199s0156.1.p 333 CGTKFSRKDKLISHVS 348 **************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.85E-6 | 210 | 237 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.7E-6 | 212 | 239 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0028 | 212 | 234 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.632 | 212 | 239 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 214 | 234 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 150 | 263 | 296 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 73 | 301 | 323 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MMNQDEHITD KGEGSMSSFS GTTTTSSKQI YVNPGTAAGT KSFEDDDVSL SLLYSLSTLQ 60 DKVQQIQSLV SFYMISTNQI NQSSGSTSLA VANIGSLVQE IITAASSMLF TCQQLHIGSN 120 NNNDIDNNLT ADAMVLEFSR QETNPGNDIV QESTNLFGVQ ERGQISFPDQ NLNWYGTETL 180 NPKKDHHHSK PRPGNDEILE LDVADLLAKY THYCQICGKG FKRDANLRMH MRAHGDEYKT 240 REALISPTSQ DKKGEYSLKK HYYSCPQQGC RWNKRHEKFQ PLKSVICAKN HYKRSHCPKM 300 YMCRRCSVKH FSVLSDLRTH EKHCGDIKWV CSCGTKFSRK DKLISHVSLF LGHVPAHGSS 360 QPPTITPKVR S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00522 | DAP | Transfer from AT5G22890 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.10199s0156.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB005243 | 0.0 | AB005243.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRN17. | |||
GenBank | AK227740 | 0.0 | AK227740.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-31-P16. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010454569.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
Swissprot | Q0WT24 | 0.0 | STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
TrEMBL | A0A178UH71 | 0.0 | A0A178UH71_ARATH; Uncharacterized protein | ||||
TrEMBL | D7M1K6 | 0.0 | D7M1K6_ARALL; Zinc finger family protein | ||||
STRING | Bostr.10199s0156.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5752 | 25 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 0.0 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.10199s0156.1.p |