PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | BGIOSGA037268-PA | ||||||||
Common Name | OsI_38063 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 395aa MW: 42176.4 Da PI: 7.7491 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.6 | 3.2e-11 | 69 | 93 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG C++G +CkF+H+p BGIOSGA037268-PA 69 EPDCSYYMRTGLCRFGMTCKFNHPP 93 789********************97 PP | |||||||
2 | zf-CCCH | 39 | 1.3e-12 | 114 | 138 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ BGIOSGA037268-PA 114 QPECQYYLKTGTCKFGATCKFHHPR 138 799********************96 PP | |||||||
3 | zf-CCCH | 39.7 | 7.9e-13 | 261 | 286 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ BGIOSGA037268-PA 261 DQPECQFYMKTGDCKFGAVCKFHHPK 286 689*********************96 PP | |||||||
4 | zf-CCCH | 37.7 | 3.4e-12 | 306 | 332 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++r+G+Ck+G++CkF H++ BGIOSGA037268-PA 306 PGEPVCTFYSRYGICKFGPNCKFDHPM 332 5789*********************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.8E-5 | 66 | 93 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.281 | 66 | 94 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-8 | 69 | 93 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-5 | 70 | 94 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.5E-4 | 72 | 92 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.7E-6 | 111 | 138 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.441 | 111 | 139 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 113 | 140 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-10 | 114 | 138 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-5 | 117 | 139 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 8.24 | 157 | 178 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 44 | 157 | 181 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.511 | 259 | 287 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.7E-5 | 259 | 286 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-9 | 261 | 286 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-6 | 262 | 289 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.7E-5 | 265 | 287 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.99 | 305 | 333 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-7 | 305 | 332 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-9 | 307 | 332 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.36E-6 | 309 | 334 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-4 | 310 | 330 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 395 aa Download sequence Send to blast |
MAAGAGAGGG GGEGGSNGGG TSPGGVSAAA AAIGPHHLGV AAAEEAMWQM TLGGGESMES 60 TPYPERIGEP DCSYYMRTGL CRFGMTCKFN HPPNRKLAVA AARMNGEYPY RVGQPECQYY 120 LKTGTCKFGA TCKFHHPREK AALANRVQLN VLGYPMRPNE KECAYYLRTG QCKFASTCYA 180 QVIVPQGLVQ VPGWNPYAAQ MGSSSPDDQQ RTPVTTQYYG SRQSETGGMG DHGMYQSYQG 240 GSVPVGVYTV QGENIFPERP DQPECQFYMK TGDCKFGAVC KFHHPKERLV PAPNCALNSL 300 GLPLRPGEPV CTFYSRYGIC KFGPNCKFDH PMGTLMYGSA TSPTGDVSSM HYQLSPSPGH 360 PGILLDGGSG RSHRVPQSDS QQIPSGDGNA EREAS |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.14912 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 37988174 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK111511 | 0.0 | AK111511.1 Oryza sativa Japonica Group cDNA clone:J013001J05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620174.1 | 0.0 | zinc finger CCCH domain-containing protein 66 isoform X1 | ||||
Swissprot | Q2QT65 | 0.0 | C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | B8BP89 | 0.0 | B8BP89_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI12G10410.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS12T0405100-01 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA12G0088700.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-136 | zinc finger protein 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|