PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA036823-PA
Common NameOsI_37118
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 543aa    MW: 60066.6 Da    PI: 9.2157
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA036823-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30116172360
                       -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve +  d+ + ei+Y+geHnh+k
  BGIOSGA036823-PA 116 DGYSWRKYGQKQVKGSEFPRSYYKCTHPTCPVKRKVEMTP-DGWIAEIVYNGEHNHPK 172
                       9***************************************.***************85 PP
2WRKY96.51.8e-30382438360
                       -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve +  d+ + ei+Y+geHnh+k
  BGIOSGA036823-PA 382 DGYSWRKYGQKQVKGSEFPRSYYKCTHPTCPVKRKVEMTP-DGWIAEIVYNGEHNHPK 438
                       9***************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.6E-27109173IPR003657WRKY domain
PROSITE profilePS5081123.009109173IPR003657WRKY domain
SuperFamilySSF1182903.53E-24111173IPR003657WRKY domain
SMARTSM007744.5E-33114172IPR003657WRKY domain
PfamPF031061.6E-23116171IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.6E-27375439IPR003657WRKY domain
PROSITE profilePS5081123.009375439IPR003657WRKY domain
SuperFamilySSF1182903.53E-24377439IPR003657WRKY domain
SMARTSM007744.5E-33380438IPR003657WRKY domain
PfamPF031061.6E-23382437IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MQSHKKVAAV KPVASRPSSR LRSFSMLQED STAIDSPRVT SLEEIILRRP KATRFTHPLS  60
NSSTEIAATR LEDSGTHTTY DQKKAETGKG ACWDNLTVSQ SVRKPNVSAK NSLSYDGYSW  120
RKYGQKQVKG SEFPRSYYKC THPTCPVKRK VEMTPDGWIA EIVYNGEHNH PKPHPPRKPT  180
LSTSVETLVA TNDAGLENKL EGCDQAIGSD AVVEALRGGC HCLDGFRNGN EISDCKKSPS  240
TQLPSHPSIA STSLPVTAQD FGTWCDMQSH KKVAAVKPVA SRPSSRLRSF SMLQEDSTAI  300
DSPRVTSLEE IILRRPKATR FTHPLSNSST EIAATRLEDS GTHTTYDQKK AETGKGACWD  360
NLTVSQSVRK PNVSAKNSLS YDGYSWRKYG QKQVKGSEFP RSYYKCTHPT CPVKRKVEMT  420
PDGWIAEIVY NGEHNHPKPH PPRKPTLSTS VETLVATNDA GLENKLEGCD QAIGSDAVVE  480
ALRGGCHCLD GFRNGNEISD CKKRLFRFGV RFHDGSCKRI LAQPHNIINL GSHLVAEYVQ  540
EKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-141164391674WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.502580.0flower| panicle| root| stem
Os.907220.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO335192070.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698188.11e-106PREDICTED: uncharacterized protein LOC102718700
TrEMBLB8BLR80.0B8BLR8_ORYSI; Uncharacterized protein
STRINGORUFI12G00130.11e-180(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-28WRKY family protein