PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA036756-PA
Common NameOsI_37240
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 321aa    MW: 35784.5 Da    PI: 6.3168
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA036756-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY56.74.8e-18147201356
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES-- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeH 56 
                       Dg++WrKYGqK++++s++prsYYrCt++   +C+++k v++ + d +  +  Y+g+H
  BGIOSGA036756-PA 147 DGHQWRKYGQKHINNSKHPRSYYRCTYRqeeKCKATKTVQQRE-DLQHAN-SYNGDH 201
                       9**************************99999********987.444332.344444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-21140215IPR003657WRKY domain
SuperFamilySSF1182904.18E-18141215IPR003657WRKY domain
SMARTSM007748.1E-29145217IPR003657WRKY domain
PROSITE profilePS5081114.584147187IPR003657WRKY domain
PfamPF031061.5E-22147215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MKNSSNKRPL VADQWHPSSV CCDHRAALRE IARGQSLVTQ LRAIVLPALH SDERGDLAAQ  60
MLEGILDCSR KAISELQLQL SSDSPHDDDG HLDDKRRVRK IVSSSSDDDD HSSSKAAEDH  120
NAKPLRQHKR RRFGDSVSLE TPVPHYDGHQ WRKYGQKHIN NSKHPRSYYR CTYRQEEKCK  180
ATKTVQQRED LQHANSYNGD HPVMYTVVYY GQHTCCKGPV ASADDHVVVE ASQISTDSHC  240
QSPGSSSSEL QAAAHAGDSS QCSNISVTCS SSVVVEDCNK LLDMLPAADE LTTDVLLFDM  300
TAYAPLDLDI NWEMDTNSLW A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-141472151068OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.861510.0root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567657900.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2981830.0DQ298183.1 Oryza sativa WRKY transcription factor 64 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620021.10.0probable WRKY transcription factor 70
TrEMBLA2ZHG60.0A2ZHG6_ORYSI; Uncharacterized protein
STRINGOS12T0116700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-17WRKY DNA-binding protein 70