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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
BGIOSGA034855-PA |
| Common Name | OsI_35212 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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| Family |
GRAS |
| Protein Properties |
Length: 413aa MW: 45534.9 Da PI: 4.3743 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA034855-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 210.6 | 8.6e-65 | 48 | 410 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89
+lLl+ Aeav++gd la+ + +rl + + +++++ Rla +f ++L++r+++ ++++y+ p++ + s ++ ++++ +e+sP
BGIOSGA034855-PA 48 SDLLLAGAEAVEAGDSILASVAFSRLDDFlsgipENGAASSFDRLAYHFDQGLRSRMSSASTGCYQ---PEPLP----SGNMLVHQIIQELSP 133
679***********************998554333334479******************9899984...55554....456778899****** PP
GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
++kf+h+t+NqaIl+a+ g+ vH++D++i++G+QW +L+ La g +R+T++ + ++ + ++ + L++fA++l++pf++n +
BGIOSGA034855-PA 134 FVKFAHFTTNQAILDAIIGDMDVHVVDLNIGEGIQWSSLMSDLAR--CGGKFFRLTAITTYADCHASTHDTVVRLLSEFADSLELPFQYNSIC 224
********************************************7..4668*********887799999999999****************87 PP
GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.......adhnsesFlerflealeyysalf 268
+++ ++l +++ + + +++V++ ++ s+s+ + + +L +vk+l+Pk+vv +e++ ++ +s+sF+e f+eal++++++f
BGIOSGA034855-PA 225 VHNEDEL--HAFFEDCKGSVIVSCDTTSMYYK--SLSTLQ--SLLLVCVKKLQPKLVVTIEEDlvrigrgVSPSSASFVEFFFEALHHFTTVF 311
7765555..777777799******99777775..554444..69*******************6555443444666***************** PP
GRAS 269 dsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
+s+++ + s + vE ellg++i++ v + g+ r+e + +e l GF + +ls + +qa++l+ ++ + + v +e+g l
BGIOSGA034855-PA 312 ESMASCFIGSSyePCLRLVEMELLGPRIQDFVVKYGSVRVEANA-----SEVL--EGFMACELSACNIAQARMLVGLFN-RVFGVVCEKGRLA 396
***77776666578899*********************999888.....5555..5***********************.77*********** PP
GRAS 360 lgWkdrpLvsvSaW 373
l+Wk+rp +svS+W
BGIOSGA034855-PA 397 LCWKSRPFISVSVW 410
************** PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 413 aa
Download sequence Send
to blast |
MVLDSNELHQ HDAPDVDVSI NCDDRIFGQE SVNLAAIQEE LLEEDSLSDL LLAGAEAVEA 60
GDSILASVAF SRLDDFLSGI PENGAASSFD RLAYHFDQGL RSRMSSASTG CYQPEPLPSG 120
NMLVHQIIQE LSPFVKFAHF TTNQAILDAI IGDMDVHVVD LNIGEGIQWS SLMSDLARCG 180
GKFFRLTAIT TYADCHASTH DTVVRLLSEF ADSLELPFQY NSICVHNEDE LHAFFEDCKG 240
SVIVSCDTTS MYYKSLSTLQ SLLLVCVKKL QPKLVVTIEE DLVRIGRGVS PSSASFVEFF 300
FEALHHFTTV FESMASCFIG SSYEPCLRLV EMELLGPRIQ DFVVKYGSVR VEANASEVLE 360
GFMACELSAC NIAQARMLVG LFNRVFGVVC EKGRLALCWK SRPFISVSVW IPV
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC120534 | 0.0 | AC120534.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0084A20, complete sequence. |
| GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
