PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA034018-PA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 406aa MW: 44742.6 Da PI: 8.8549 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.5 | 7.1e-11 | 21 | 44 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C++++rtG C++G +CkF+H+ BGIOSGA034018-PA 21 EPDCSYYMRTGLCRFGMTCKFNHP 44 789********************8 PP | |||||||
2 | zf-CCCH | 39 | 1.4e-12 | 66 | 90 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ BGIOSGA034018-PA 66 QPECQYYLKTGTCKFGATCKFHHPR 90 799********************96 PP | |||||||
3 | zf-CCCH | 36.7 | 6.8e-12 | 112 | 136 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ BGIOSGA034018-PA 112 EKECAYYLRTGQCKFGSTCKFHHPQ 136 679********************97 PP | |||||||
4 | zf-CCCH | 39.7 | 8.2e-13 | 273 | 298 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ BGIOSGA034018-PA 273 DQPECQFYMKTGDCKFGAVCKFHHPK 298 689*********************96 PP | |||||||
5 | zf-CCCH | 38.6 | 1.8e-12 | 318 | 344 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C f++r+G+Ck+G++CkF H++ BGIOSGA034018-PA 318 PGEPICTFYSRYGICKFGPNCKFDHPM 344 5799*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.7E-4 | 18 | 45 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.868 | 18 | 46 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-8 | 21 | 44 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 23 | 46 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-4 | 24 | 45 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.244 | 63 | 91 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-6 | 63 | 90 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 66 | 92 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-10 | 66 | 90 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-5 | 69 | 91 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.619 | 109 | 137 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-5 | 109 | 136 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.05E-6 | 109 | 137 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 112 | 136 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 115 | 135 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.511 | 271 | 299 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.7E-5 | 271 | 298 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-9 | 273 | 298 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 274 | 299 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-4 | 277 | 298 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-6 | 316 | 343 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-7 | 317 | 344 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.178 | 317 | 345 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.5E-10 | 319 | 344 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-4 | 322 | 342 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MWQMNLGEAM EAGPYPERIG EPDCSYYMRT GLCRFGMTCK FNHPADRKMA VAAARMKGEY 60 PQRIGQPECQ YYLKTGTCKF GATCKFHHPR EKAAIATRVQ LNALGYPLRP NEKECAYYLR 120 TGQCKFGSTC KFHHPQPSNT MVAVRGSVYS PGQSVTSPSQ HTYPGAVTNW PLSRSASFIA 180 SPRWPGHSSY AQVIVPPGLV QVPGWNPYAA QIGSSSSDDQ QRTAGGAQYY TGSRHSETPN 240 MGDQGMFSSY QAGSVPLGLY TVQRESIFPE RPDQPECQFY MKTGDCKFGA VCKFHHPKER 300 IIPTPNCALS SLGLPLRPGE PICTFYSRYG ICKFGPNCKF DHPMGTVMYG LATSPTGDVS 360 ARRMLAPVPA HSEVSPDNVS GRSRRITHSD SQQIPSGERG TEREAS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.12914 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115485468 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX972148 | 0.0 | JX972148.1 Oryza sativa Japonica Group clone KCS005D01 zinc finger protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617449.1 | 0.0 | zinc finger CCCH domain-containing protein 63 isoform X1 | ||||
Swissprot | Q2R4J4 | 0.0 | C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63 | ||||
TrEMBL | A0A0E0MFD0 | 0.0 | A0A0E0MFD0_ORYPU; Uncharacterized protein | ||||
TrEMBL | I1R036 | 0.0 | I1R036_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA11G0112800.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-157 | zinc finger protein 1 |
Publications ? help Back to Top | |||
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