PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA032080-PA | ||||||||
Common Name | OsI_33207 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 406aa MW: 45095.6 Da PI: 4.8089 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 49.2 | 1.8e-15 | 33 | 141 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyf.FskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 +deelv ++L+++ e+++l++ +v+ ++i ++P++ + + wy Fs ++ ++g+++ + k+gyWk g+ + + ++ vg BGIOSGA032080-PA 33 SDEELV-RFLAERKEAHSLPE-NVFVGMNISLIDPRNSE-------DIWYMnFSDDPQSPKNGENAIIKSKTGYWKVVGTVRIPT--STVIVG 114 69****.99999999999999.89***********9874.......5687626666666666777777999********966554..5899** PP NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 +k tL y+g+ap+g++t Wvm+ey + BGIOSGA032080-PA 115 MKVTLDHYEGEAPSGKRTGWVMDEYLI 141 *************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.774 | 24 | 162 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.27E-24 | 31 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-7 | 33 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MSAKIGSIFS RTIMSSKVPG LALLNTSISK FWSDEELVRF LAERKEAHSL PENVFVGMNI 60 SLIDPRNSED IWYMNFSDDP QSPKNGENAI IKSKTGYWKV VGTVRIPTST VIVGMKVTLD 120 HYEGEAPSGK RTGWVMDEYL IEQNDEANLP QDYKNLCTIF FQGDDILNAG DKQICLNANV 180 PNERKEFYLQ YLAELEEQNA AWNNQAVSVN EQDVSSSKGL DGQKTSAADD QSVNHAPSRE 240 GYIELNDFLN SDSSASTSEY SSQRTMISEE YFDSDAFLRE IRNDHNAADE EHTDSKFSVA 300 AASKSDCVVI SPPEQGFVNN LDNHATIAGD SPQKSVKNDK VDEHSSEEHP QHSPTTSCFP 360 SHVKRSLSSS SSSSQGTSNS KSPQRQRERS NKKIGKLGKY WCCGSL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.6124 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32982705 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK072682 | 0.0 | AK072682.1 Oryza sativa Japonica Group cDNA clone:J023135B15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614544.1 | 0.0 | protein ATAF2 isoform X1 | ||||
TrEMBL | B8BGF1 | 0.0 | B8BGF1_ORYSI; Uncharacterized protein | ||||
STRING | OBART10G07140.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10916 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10500.1 | 1e-14 | NAC domain containing protein 53 |