PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA032080-PA
Common NameOsI_33207
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 406aa    MW: 45095.6 Da    PI: 4.8089
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA032080-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.21.8e-153314110128
               NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyf.FskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101
                       +deelv ++L+++ e+++l++ +v+  ++i  ++P++ +       + wy  Fs   ++ ++g+++  + k+gyWk  g+ +  +  ++  vg
  BGIOSGA032080-PA  33 SDEELV-RFLAERKEAHSLPE-NVFVGMNISLIDPRNSE-------DIWYMnFSDDPQSPKNGENAIIKSKTGYWKVVGTVRIPT--STVIVG 114
                       69****.99999999999999.89***********9874.......5687626666666666777777999********966554..5899** PP

               NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
                       +k tL  y+g+ap+g++t Wvm+ey +
  BGIOSGA032080-PA 115 MKVTLDHYEGEAPSGKRTGWVMDEYLI 141
                       *************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.77424162IPR003441NAC domain
SuperFamilySSF1019413.27E-2431162IPR003441NAC domain
PfamPF023651.0E-733139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MSAKIGSIFS RTIMSSKVPG LALLNTSISK FWSDEELVRF LAERKEAHSL PENVFVGMNI  60
SLIDPRNSED IWYMNFSDDP QSPKNGENAI IKSKTGYWKV VGTVRIPTST VIVGMKVTLD  120
HYEGEAPSGK RTGWVMDEYL IEQNDEANLP QDYKNLCTIF FQGDDILNAG DKQICLNANV  180
PNERKEFYLQ YLAELEEQNA AWNNQAVSVN EQDVSSSKGL DGQKTSAADD QSVNHAPSRE  240
GYIELNDFLN SDSSASTSEY SSQRTMISEE YFDSDAFLRE IRNDHNAADE EHTDSKFSVA  300
AASKSDCVVI SPPEQGFVNN LDNHATIAGD SPQKSVKNDK VDEHSSEEHP QHSPTTSCFP  360
SHVKRSLSSS SSSSQGTSNS KSPQRQRERS NKKIGKLGKY WCCGSL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.61240.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329827050.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0726820.0AK072682.1 Oryza sativa Japonica Group cDNA clone:J023135B15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614544.10.0protein ATAF2 isoform X1
TrEMBLB8BGF10.0B8BGF1_ORYSI; Uncharacterized protein
STRINGOBART10G07140.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109162632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.11e-14NAC domain containing protein 53