PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA027551-PA

Common Name

OsI_28041

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 444aa MW: 45190.6 Da PI: 7.3321

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA027551-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12	0.00039	333	366	16	54
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + ++ L++l+ + +K + a++L +++eYIk L BGIOSGA027551-PA 333 LGDRVTALQQLVSPF-----GKTDTASVLHETIEYIKFL 366 556666677777776.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.592	317	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.02E-11	327	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-8	327	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.28E-4	327	370	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MYGGGGVAAG GATTTTGSHG GGGGDWWSAA VSSCSAPAPE TMQGFGGWSA AVVAVDGGGN 60 TSRSAAGNTA SSESPGSLAT GSSITFQEPA GGVADPAAIA VHAQTVAGGG GGGGWNQQPF 120 LDGSGFHGYM SSSRNDHHTN HHHHQINTPS LMSNSSSNNG VMLQEHQHDQ NYQFLSNLGF 180 ELLSSPTSPY GGGGGFRSSL LRSLTEPAAA AKPNDSPGFQ QYHHHQPAMN LQPPAAAAGR 240 EPLQFTNSTA APFWNPSSGF TVAAEGTALG GAGASPAQPT PASLAAKRAL EGVGDSSSII 300 TKKAKADSTP LKKSRTGTPS ALPTTFKVRK EKLGDRVTAL QQLVSPFGKT DTASVLHETI 360 EYIKFLHDQV GALSAPYLKN RQQVPHLKNS TGVDNDGGGG GEATAASKRD LTGRGLCLVP 420 ISSTFAVASE TPVDFWTPFG AAFR

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MYGGGGVAAG GATTTTGSHG GGGGDWWSAA VSSCSAPAPE TMQGFGGWSA AVVAVDGGGN  60
TSRSAAGNTA SSESPGSLAT GSSITFQEPA GGVADPAAIA VHAQTVAGGG GGGGWNQQPF  120
LDGSGFHGYM SSSRNDHHTN HHHHQINTPS LMSNSSSNNG VMLQEHQHDQ NYQFLSNLGF  180
ELLSSPTSPY GGGGGFRSSL LRSLTEPAAA AKPNDSPGFQ QYHHHQPAMN LQPPAAAAGR  240
EPLQFTNSTA APFWNPSSGF TVAAEGTALG GAGASPAQPT PASLAAKRAL EGVGDSSSII  300
TKKAKADSTP LKKSRTGTPS ALPTTFKVRK EKLGDRVTAL QQLVSPFGKT DTASVLHETI  360
EYIKFLHDQV GALSAPYLKN RQQVPHLKNS TGVDNDGGGG GEATAASKRD LTGRGLCLVP  420
ISSTFAVASE TPVDFWTPFG AAFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012616	0.0	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648821.1	0.0	transcription factor bHLH112 isoform X2
TrEMBL	A2YRU3	0.0	A2YRU3_ORYSI; Uncharacterized protein
STRING	ORUFI08G05340.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2216	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	3e-42	bHLH family protein