PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA025100-PA
Common NameOsI_24793
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 358aa    MW: 39680 Da    PI: 4.6606
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA025100-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.23.9e-121348338
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavi 38
                      ie+++ r+ t+skRr g++K A+ LS L+da va+ 
  BGIOSGA025100-PA 13 IEEDRDRSLTLSKRRDGLFKLANDLSLLTDASVAIC 48
                      99*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-6261IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-5525IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-13772IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.4561047IPR002100Transcription factor, MADS-box
PfamPF003198.9E-121350IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-52540IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-54061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MVRRGRRKGV RYIEEDRDRS LTLSKRRDGL FKLANDLSLL TDASVAICLH DSNKAQFFGA  60
PSVKPVVDAF VSEAEPFADE QLKAKLTSMQ SELVQLENEE EEKDKKTEES IQRFKEAQEE  120
SLGMGMAKHL FSRLEDLSHD DMRELLDVLL PLQQDFKKRL PPLRRGSKLQ IGGSSAWAHQ  180
QPSCSRFLAS HRPFTPLLPG GTSGVPMIPP PPVPGSPWSQ IFPLRPPLFP SPELVPSQQL  240
PPVSPPQNTV APPPMHAPLV QQPLTNQSSA VPLLTQWQMR FGDQPPAEVQ ACTPVEQPQN  300
DNAVHTPTFS DSFLLELLAD VSDDGIATAE PLCSPPIDDQ FLADIDWLAE LDTIDGNL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037420.0AP003742.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1118_D07.
GenBankAP0043380.0AP004338.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0507H12.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882749.10.0uncharacterized protein LOC107277131
TrEMBLA0A0E0GK070.0A0A0E0GK07_ORYNI; Uncharacterized protein
TrEMBLA0A0E0Q3R00.0A0A0E0Q3R0_ORYRU; Uncharacterized protein
TrEMBLB8B7250.0B8B725_ORYSI; Uncharacterized protein
TrEMBLQ6ZLL00.0Q6ZLL0_ORYSJ; Os07g0133900 protein
STRINGORUFI07G02010.10.0(Oryza rufipogon)
STRINGONIVA03G12000.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-09AGAMOUS-like 61