PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA024948-PA | ||||||||
Common Name | OsI_24642 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 288aa MW: 30215.8 Da PI: 6.5049 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.7 | 1.2e-33 | 122 | 179 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+ BGIOSGA024948-PA 122 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHSHH 179 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.6E-34 | 106 | 180 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.19E-29 | 113 | 179 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.079 | 116 | 181 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-39 | 121 | 180 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.8E-27 | 122 | 179 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MAGAGDWPFA ADEAYADSSA IFAELGWANG LAVVDAVGEL LPPLDPPGEL ATPPPPPLDL 60 PETPAGSSAD GAASSCSTDD ADGGKPAAAS TEAASKSLTP GKKRARQPRF AFMTKSEIDH 120 LEDGYRWRKY GQKAVKNSPF PRSYYRCTNS KCTVKKRVER SSDDPSVVIT TYEGQHSHHT 180 VTFPRAAATA AGFSHIHAMA ALAAAPFSAH QQLYSNLQPP PPTMPLAATT PASSSSLLQL 240 PLHCNHELQV VASCGGYPSS SSSPPASVLP VDKGLLDDMV PRAMRHDG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-26 | 111 | 178 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 1e-26 | 111 | 178 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.38985 | 0.0 | callus| leaf | ||||
Os.42490 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 33519203 | 0.0 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00067 | PBM | Transfer from AT1G69310 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK240958 | 0.0 | AK240958.1 Oryza sativa Japonica Group cDNA, clone: J065045F23, full insert sequence. | |||
GenBank | AY341858 | 0.0 | AY341858.1 Oryza sativa (japonica cultivar-group) WRKY18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645717.1 | 0.0 | probable WRKY transcription factor 57 | ||||
TrEMBL | A2YHH2 | 0.0 | A2YHH2_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q6IEQ2 | 0.0 | Q6IEQ2_ORYSJ; WRKY transcription factor 29 | ||||
TrEMBL | Q8H5U1 | 0.0 | Q8H5U1_ORYSJ; Os07g0111400 protein | ||||
STRING | OS07T0111400-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2125 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 3e-53 | WRKY DNA-binding protein 57 |