PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA020403-PA | ||||||||
Common Name | OsI_21060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 227aa MW: 24097.9 Da PI: 4.3373 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 23.8 | 9e-08 | 87 | 115 | 30 | 58 |
TT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 30 agCpvkkkversaedpkvveitYegeHnh 58 gC+++k+v+r++ dp +++++Y g+H++ BGIOSGA020403-PA 87 MGCNATKQVQRADGDPLLFDVVYLGDHTC 115 59*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 1.4E-5 | 77 | 117 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-7 | 85 | 115 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.1E-7 | 85 | 117 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.36E-7 | 87 | 117 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MVELCGGEGE GQIMLATELT QLRAMARELE AKMDPDRVAA RELCRALASS VDRSIRLAAS 60 CFPPPEHPPP AAGNAGRDAA FKKRQVMGCN ATKQVQRADG DPLLFDVVYL GDHTCGQAAV 120 AAAAQSAPPE HAGQEQQRQS SLLAAGTEGI HQQVVAEPMA APFLFTSTAA GGVDDGYFSF 180 ISPANSDCQF SSDFSAGSVG VDMDHEARFE DLFSSTLEFF QSEIQNL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.87972 | 0.0 | leaf |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 117240618 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC104284 | 0.0 | AC104284.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1735_C10, complete sequence. | |||
GenBank | AK108389 | 0.0 | AK108389.1 Oryza sativa Japonica Group cDNA clone:002-142-F03, full insert sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638413.1 | 1e-137 | probable WRKY transcription factor 41 | ||||
TrEMBL | B8AWU2 | 1e-164 | B8AWU2_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA05G28480.1 | 1e-137 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3355 | 31 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.2 | 8e-12 | WRKY family protein |