PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA017275-PA

Common Name

LG1, OsI_017105, OSIGBa0158D24.2, SPL8

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

SBP

Protein Properties

Length: 338aa MW: 36273.2 Da PI: 8.3078

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA017275-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.1	1.6e-40	184	262	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++ BGIOSGA017275-PA 184 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 262 6****************************98725689***********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.4E-34	179	247	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.291	182	260	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.71E-37	183	263	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.1E-31	185	259	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MMNVPSAAAA SSCDDFGYNA TPPPPPSLLP IMDQDGGGGS IQRDHHHHHN HQQLGYNLEP 60 SSLALLPPSN AAAAAAHHAT IAHASPHDLL QFYPTSHYLA AAGGAGGGGN PYSHFTAAAA 120 AGSTFQSYYQ QPPQAAPEYY FPTLVSSAEE NMASFAATQL GLNLGYRTYF PPRGGYTYGH 180 HPPRCQAEGC KADLSSAKRY HRRHKVCEHH SKAPVVVTAG GLHQRFCQQC SRFHLLDEFD 240 DAKKSCRKRL ADHNRRRRKS KPSDGEHSGE KRRAQANKSA ATKDKAGSSS KNAGIGDGFE 300 TQLLGGAHMS KDQDQAMDLG EVLKEAVDPK VFLVGEAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-27	185	259	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	254	272	RRRRKSKPSDGEHSGEKRR
2	255	260	RRRKSK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.52576	0.0	leaf\| panicle\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32978122	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269\|PubMed:16861571}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB776991	0.0	AB776991.1 Oryza sativa Japonica Group LG1 mRNA for squamosa promoter-binding-like protein 8, complete cds, cultivar: Nipponbare.
GenBank	AK068104	0.0	AK068104.1 Oryza sativa Japonica Group cDNA clone:J013129G14, full insert sequence.
GenBank	JX462783	0.0	JX462783.1 Oryza sativa Indica Group cultivar Teqing PAC1 mRNA, complete cds.
GenBank	JX462784	0.0	JX462784.1 Oryza rufipogon strain C4 PAC1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634037.1	0.0	squamosa promoter-binding-like protein 8
Swissprot	Q01KM7	0.0	SPL8_ORYSI; Squamosa promoter-binding-like protein 8
TrEMBL	L8B8S3	0.0	L8B8S3_ORYSJ; Squamosa promoter-binding-like protein 8
TrEMBL	S4UXR1	0.0	S4UXR1_ORYSI; PAC1
TrEMBL	S4UY49	0.0	S4UY49_ORYRU; PAC1
STRING	ORUFI04G29620.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6990	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	8e-43	squamosa promoter binding protein-like 8

Publications ? help Back to Top
Xie K,Wu C,Xiong L Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice. Plant Physiol., 2006. 142(1): p. 280-93 [PMID:16861571] Yang Z, et al. Comparative study of SBP-box gene family in Arabidopsis and rice. Gene, 2008. 407(1-2): p. 1-11 [PMID:17629421]