PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA013145-PA
Common NameOsI_12654
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 380aa    MW: 42571.6 Da    PI: 7.4688
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA013145-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.19.9e-16421231499
                       T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                         +++p +fa++++g    s ++ l+++s+++W++ +   +++ +  vl+ GWkeFv+ ng++egD ++ +++g  s+f   v +f+ 
  BGIOSGA013145-PA  42 ESMTVPARFANNFNGH--ISEEVNLRSPSSETWSIGV--ANSDAGeLVLQPGWKEFVDGNGIEEGDCLLVRYSGVsSSF--DVLIFDP 123
                       4599******888666..6779***************..5555445***************************987887..8888875 PP
2B338.42.2e-12262342585
                       -..-HHHHT..T-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                B3   5 ltpsdvlks..grlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         +s+v +s  +++ ++ +fa ++ g ++ +  +++le  ++g +W v + +r++ ++++ ++GW++F+ +n+L + D+++F+l+
  BGIOSGA013145-PA 262 IHSSHVRSSkyCIVGVSPEFAGKYlGAVE-R--EVVLERaSRGGEWHVLFVHRQNTRGFY-GAGWRQFAGDNRLVAHDVCLFELT 342
                       4445555445599999********76663.3..6999998999*******9999999986.77*******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-1927126IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.22529124IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-1930129IPR015300DNA-binding pseudobarrel domain
CDDcd100172.47E-1630122No hitNo description
SMARTSM010199.3E-432124IPR003340B3 DNA binding domain
PfamPF023622.4E-1242122IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-16252342IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-16252369IPR015300DNA-binding pseudobarrel domain
CDDcd100174.45E-12256341No hitNo description
SMARTSM010190.006258362IPR003340B3 DNA binding domain
PROSITE profilePS5086310.221258372IPR003340B3 DNA binding domain
PfamPF023626.2E-10270342IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGMLKIGKNC SVCKEWQEHC YWSHMADHSK HFLKHMVGDF TESMTVPARF ANNFNGHISE  60
EVNLRSPSSE TWSIGVANSD AGELVLQPGW KEFVDGNGIE EGDCLLVRYS GVSSSFDVLI  120
FDPSGCEKAS PHFVGSHGFG RAENSAGAEQ GGRNGRRTPP IVDGDNGHRH HLEMTLHRNS  180
CRSIPRACKR SLFSDETEAK ENDGEDEDED VVAAAEGGRY GEYYFSRHGR VAEYNLRKED  240
REEISRVPVP VQPGNPVFVQ VIHSSHVRSS KYCIVGVSPE FAGKYLGAVE REVVLERASR  300
GGEWHVLFVH RQNTRGFYGA GWRQFAGDNR LVAHDVCLFE LTMVDAAAGG GGNRRRRWSR  360
RPTMTVHVLR RVRGRFVLLR
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329938690.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086600.0AK108660.1 Oryza sativa Japonica Group cDNA clone:002-148-F01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628568.10.0B3 domain-containing protein Os03g0622200
SwissprotQ10GM30.0Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBLB8AML50.0B8AML5_ORYSI; Uncharacterized protein
STRINGORGLA03G0245100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-26B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]