PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA013144-PA

Common Name

OsI_12653

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Protein Properties

Length: 381aa MW: 42859.8 Da PI: 6.692

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA013144-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.2	7.3e-19	42	122	14	99
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++p +fa++++g s + l+++sg++W++ + +++ + vl++GWkeFv+ang++e+D ++F+++g s+f v +f+ BGIOSGA013144-PA 42 ESMIVPSRFANNFNGH--ISEVVNLKSPSGKTWSIGV--ANSDTGeLVLRSGWKEFVDANGVQENDCLLFRYSGVSSF--DVLIFDP 122 45899***888666..6779***********..5555555*************************99999..8888875 PP
2	B3	38.1	2.8e-12	273	345	14	84
T-EE--HHH.HTT---..--SEEEEEETTS....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 14 grlvlpkkfaeehggkkeesktltledesg....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 + + ++ +fa ++ g+ + +++++e g +W v++ r +s++ + ++GW++F+++ngL + D+++F+l BGIOSGA013144-PA 273 STVGVSPEFAGRYLGP-AMAREVVMERGGGggggDQWHVRFVRRESSRG-FHGTGWRRFARDNGLLAHDVCLFEL 345 5566778888888444.45678999998878999*****65555555.6788*****************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.94E-23	28	129	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	9.1E-23	28	125	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	15.002	29	123	IPR003340	B3 DNA binding domain
SMART	SM01019	9.9E-11	32	123	IPR003340	B3 DNA binding domain
CDD	cd10017	1.63E-18	40	121	No hit	No description
Pfam	PF02362	5.6E-16	42	121	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.84E-13	252	345	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.5E-14	252	346	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.74E-11	256	345	No hit	No description
SMART	SM01019	0.0095	258	365	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.898	260	362	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.6E-10	274	345	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MGMLKIGKNC SVCKEWQEHC YWSHMADDCK HFLTYMVGDF TESMIVPSRF ANNFNGHISE 60 VVNLKSPSGK TWSIGVANSD TGELVLRSGW KEFVDANGVQ ENDCLLFRYS GVSSFDVLIF 120 DPSGCEKATP HFVENRGFGR EEKSAGAEGG GRDGDKNGHH QHQLEMTPHK NSSRCRSIPS 180 AYMHERACLA EQDHREEKKE GDDEDEDEDE DEDVDKDGED RYYFCRHGGR VTEYNLSKGD 240 KEEISRVPVP VEPGNPVLVK VIHASHLLSS RYSTVGVSPE FAGRYLGPAM AREVVMERGG 300 GGGGGDQWHV RFVRRESSRG FHGTGWRRFA RDNGLLAHDV CLFELRLVDG AGAGDRLRRR 360 PRPTMAVHVL RRVRGRFVLI R

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MGMLKIGKNC SVCKEWQEHC YWSHMADDCK HFLTYMVGDF TESMIVPSRF ANNFNGHISE  60
VVNLKSPSGK TWSIGVANSD TGELVLRSGW KEFVDANGVQ ENDCLLFRYS GVSSFDVLIF  120
DPSGCEKATP HFVENRGFGR EEKSAGAEGG GRDGDKNGHH QHQLEMTPHK NSSRCRSIPS  180
AYMHERACLA EQDHREEKKE GDDEDEDEDE DEDVDKDGED RYYFCRHGGR VTEYNLSKGD  240
KEEISRVPVP VEPGNPVLVK VIHASHLLSS RYSTVGVSPE FAGRYLGPAM AREVVMERGG  300
GGGGGDQWHV RFVRRESSRG FHGTGWRRFA RDNGLLAHDV CLFELRLVDG AGAGDRLRRR  360
PRPTMAVHVL RRVRGRFVLI R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	354	359	DRLRRR
2	355	361	RLRRRPR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.51715	0.0	callus

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32973524	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK063506	0.0	AK063506.1 Oryza sativa Japonica Group cDNA clone:001-116-F06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630283.1	0.0	B3 domain-containing protein Os03g0622100
Swissprot	Q10GM4	0.0	Y3221_ORYSJ; B3 domain-containing protein Os03g0622100
TrEMBL	B8AML4	0.0	B8AML4_ORYSI; Uncharacterized protein
STRING	OS03T0622100-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP562	34	179

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	6e-29	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]