PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA013143-PA
Common NameOsI_12652
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 280aa    MW: 31905 Da    PI: 10.099
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA013143-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3681.3e-2119941798
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                      ++p++f+ ++ggk   +k ++le++sg +++v++  +k+sgr+vl++GW ++v+a++Lk gDf+vFk++g+s+   +  +f+
  BGIOSGA013143-PA 19 TIPNEFLHNFGGK--IPKSIKLETRSGLTFDVQV--TKNSGRVVLQSGWASYVSAHDLKIGDFLVFKYSGDSQL--KTLIFD 94
                      7******877888..6778***************..********************************998777..777766 PP
2B343.84.5e-141982791599
                       -EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                B3  15 rlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                        + ++kk+a+ +       e+ t++l + +g+sW+v+++ +k+ ++ +l+ GW++F+ +n+L  gD+++F l ++ ++  + v+++r+
  BGIOSGA013143-PA 198 TVEISKKYADVYlpF----EDGTVVL-QHHGKSWNVRCCLTKQNSKRFLK-GWRQFAGDNKLHLGDICLFDLLKDkKKYVMDVHIIRR 279
                       566778888666431....2225555.55*********996655554555.********************99887888888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.14396IPR003340B3 DNA binding domain
SMARTSM010190.00881396IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-201798IPR015300DNA-binding pseudobarrel domain
CDDcd100174.73E-171994No hitNo description
Gene3DG3DSA:2.40.330.102.9E-2019106IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-191994IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-22175279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-21176279IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-16181278No hitNo description
PROSITE profilePS5086311.984184280IPR003340B3 DNA binding domain
SMARTSM010190.001185280IPR003340B3 DNA binding domain
PfamPF023622.0E-12199279IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MAFRIHAVNR LYFPGPKYTI PNEFLHNFGG KIPKSIKLET RSGLTFDVQV TKNSGRVVLQ  60
SGWASYVSAH DLKIGDFLVF KYSGDSQLKT LIFDSSGCEK VCEKPVDMSG RSYDIAMRNS  120
QDEKKKRKQR DISRQGTVKP SEEGLKAELV PGCILPSRTD LTRLQKNILI EKVKAINSET  180
PIYGYVMNNS SIHGIPCTVE ISKKYADVYL PFEDGTVVLQ HHGKSWNVRC CLTKQNSKRF  240
LKGWRQFAGD NKLHLGDICL FDLLKDKKKY VMDVHIIRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629587.10.0putative B3 domain-containing protein Os03g0621600
SwissprotQ851V10.0Y3160_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLB8AML30.0B8AML3_ORYSI; Uncharacterized protein
TrEMBLB9F9R60.0B9F9R6_ORYSJ; Uncharacterized protein
STRINGORGLA03G0244900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-16B3 family protein