PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA013142-PA | ||||||||
Common Name | OsI_12650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | B3 | ||||||||
Protein Properties | Length: 843aa MW: 96796 Da PI: 9.8014 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.3 | 4.6e-21 | 24 | 113 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffkv+ +++ ++++p kfae++ + + t++l+ ++g++ +v + +k+s++ vltkGW eF++++++k gDf+vF+++g+s+f BGIOSGA013142-PA 24 FFKVM--IGGFRR-QMTIPYKFAENFRDQ--IQGTIKLKARNGNTCSVLV--DKCSNKLVLTKGWAEFANSHDIKMGDFLVFRYTGNSQF--E 107 56666..445555.6********888655..4459***************..**************************************..9 PP EEEE-S CS B3 94 vkvfrk 99 vk+f+ BGIOSGA013142-PA 108 VKIFDP 113 999986 PP | |||||||
2 | B3 | 35.8 | 1.4e-11 | 212 | 292 | 1 | 83 |
EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFk 83 f+ v+++s+v+++ + + +++k+a+e+ gg+ ++lt +++g++W+vk++++k++ r +l+kGW++F ++n+L+ D + ++ BGIOSGA013142-PA 212 FVAVMKKSNVTRQpCYVAISRKYANEYfpGGD----QMLT-LQRHGKRWQVKFCISKRKLR-MLSKGWRKFTRDNELQgIVDCMKLT 292 77889999999999999**********76555....3455.667*********77666666.89*************9555655555 PP | |||||||
3 | B3 | 65.6 | 7.2e-21 | 323 | 404 | 12 | 99 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++r+++p kfa++++g+ skt++le ++g +++v++ +kk + vl++GW++Fv+a++L+ gDf+vFk++g +f l v +f+ BGIOSGA013142-PA 323 FHKRMTIPDKFARHFKGV--ISKTIKLEPRNGYTFDVQV--TKKLNILVLGSGWESFVNAHDLNMGDFLVFKYNG--DFLLQVLIFDP 404 4568********999999..899****************..*******************************976..88889999985 PP | |||||||
4 | B3 | 57.6 | 2.3e-18 | 549 | 635 | 2 | 97 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 fkv+ ++ r+++p++f++ + gk ++t++l+ ++g +++v++ +k+ g++ l++GWk Fv a++L+ gDf+vF++dg s+ +v BGIOSGA013142-PA 549 FKVM--IGRFR-ERMIIPNEFLQYFRGK--IPRTIKLQLRDGCTYDVQV--TKNLGKISLQSGWKAFVTAHDLQMGDFLVFSYDGISKL--KV 632 5555..44444.57********555666..66789999999********..********************************986555..77 PP EEE CS B3 95 kvf 97 +f BGIOSGA013142-PA 633 LIF 635 777 PP | |||||||
5 | B3 | 47.7 | 2.8e-15 | 759 | 842 | 12 | 99 |
HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ks+ + + +++a+ + ke + +t +++g+ Wev ++ +k ++ l++GW++F+++n+L++gD+++F+l +++e +++v+++ k BGIOSGA013142-PA 759 KSQTVDICREYADVYlP-FKELN--MT-LQRHGKNWEVLCR-TKDTRTKRLSTGWSRFAQENNLQVGDICLFELLKKKEYSMNVHIIPK 842 56667777888877742.22333..44.348*********4.44444478***********************9999999999999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.0E-24 | 18 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-25 | 18 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.59 | 21 | 114 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.40E-20 | 23 | 112 | No hit | No description |
SMART | SM01019 | 1.5E-13 | 24 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-19 | 24 | 112 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.1E-24 | 200 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-15 | 205 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.48E-13 | 210 | 283 | No hit | No description |
SMART | SM01019 | 8.9E-4 | 212 | 307 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.5E-10 | 212 | 283 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.122 | 213 | 307 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-25 | 307 | 418 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.02E-23 | 309 | 407 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.929 | 312 | 405 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.22E-20 | 313 | 403 | No hit | No description |
SMART | SM01019 | 1.1E-11 | 315 | 405 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-18 | 315 | 403 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.1E-22 | 541 | 640 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.704 | 545 | 638 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.78E-21 | 548 | 635 | No hit | No description |
SMART | SM01019 | 3.0E-12 | 548 | 638 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.5E-16 | 548 | 635 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-21 | 558 | 646 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-20 | 741 | 840 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-18 | 742 | 840 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.266 | 748 | 843 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.40E-13 | 750 | 841 | No hit | No description |
SMART | SM01019 | 5.6E-8 | 751 | 843 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-13 | 758 | 842 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 843 aa Download sequence Send to blast |
MSKSGCERCR GRGFWDTDDQ DTYFFKVMIG GFRRQMTIPY KFAENFRDQI QGTIKLKARN 60 GNTCSVLVDK CSNKLVLTKG WAEFANSHDI KMGDFLVFRY TGNSQFEVKI FDPSGCVKAA 120 SHNAVNIGQH AQNMQGDPIE ILSCSDEHLR AQSLTTEWQN QPEKDVIDNC NKKMKTEHAS 180 SSEDDQETPT AEVHRMKVEE MVRAIHSNHP VFVAVMKKSN VTRQPCYVAI SRKYANEYFP 240 GGDQMLTLQR HGKRWQVKFC ISKRKLRMLS KGWRKFTRDN ELQGIVDCMK LTRCGQKMRK 300 LNTRSTARDD QEKYFFKVMI GDFHKRMTIP DKFARHFKGV ISKTIKLEPR NGYTFDVQVT 360 KKLNILVLGS GWESFVNAHD LNMGDFLVFK YNGDFLLQVL IFDPSGCEKS TSCSMENAID 420 HVGQGWKEHN DISTSYHDQP KGNKHWMQKD SSSKGNKIGN TRSSNTPSKF SGCILPRGTC 480 LPVVQEKKMK EKIQAIHSKT PMYGNVMTKC NVSGSLVFFY KMRRPGARCR EGHAHFNGNH 540 IDGQYKNFFK VMIGRFRERM IIPNEFLQYF RGKIPRTIKL QLRDGCTYDV QVTKNLGKIS 600 LQSGWKAFVT AHDLQMGDFL VFSYDGISKL KVLIFGPSGC EKVHSRPTLK NATHCGEKWE 660 EPLHISSNSH DLPVKSPQNV SKSEKQWDSS EQENDTANIE EVALQGDDLQ GHPVLNCILP 720 KHTRLTDMQK HQLESKVGAI HSEIPIYGCI LRKSRVHGKS QTVDICREYA DVYLPFKELN 780 MTLQRHGKNW EVLCRTKDTR TKRLSTGWSR FAQENNLQVG DICLFELLKK KEYSMNVHII 840 PKK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297601337 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880058.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 isoform X1 | ||||
Swissprot | Q851V5 | 0.0 | Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | B8AML1 | 0.0 | B8AML1_ORYSI; Uncharacterized protein | ||||
STRING | ORGLA03G0244700.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2901 | 29 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-23 | B3 family protein |