PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA012441-PA
Common NameOsI_11195
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 439aa    MW: 46435.5 Da    PI: 5.2487
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA012441-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93.1e-07366389226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       ktelC+ + r G C+yG+r  FaHg
  BGIOSGA012441-PA 366 KTELCNKWER-GACPYGARGGFAHG 389
                       8*********.*******9777776 PP
2zf-CCCH18.53.6e-06402428127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ykt +C+ fa+   C+yG rC+F H+p
  BGIOSGA012441-PA 402 YKTLPCQMFAAASGCPYGHRCHFRHSP 428
                       9***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.3E-12360396IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.812364391IPR000571Zinc finger, CCCH-type
SMARTSM003560.0082364390IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.79E-5365395IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4366389IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-10397428IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-7398427IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.746401429IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4401428IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MKLGISGGAG EAMEGELSFV SPARSSCFSF EGGGSGSPTW VSTVEALLRS PTSSVSDGGG  60
GGGGGYNSPA RASSPLQKQI PDCRDAGDFS SLTWASTLEK PLESPSSCIS DGRGGGFGSP  120
TSAFPPEKLL ISPPTCVSDN RGVGNGGGFP SLPWASSLER LLTSPSSCVS DSRGVGNADD  180
FPSLPWASSL EKPLTSPSSC VSDGRSGGYS SPLGASAERE REVREAEMLL RAIAERYDDC  240
FLRLRDAAAE LSDLHRERLR LAAENLHLSL LLEELESEQR KQASAMAPPK LEEDEAAQGG  300
APKSISIRSP GYLSQKPPQG QARPQRFRVR ASQAMEEAAA AGDEEDEEDK GGGEVEVEAY  360
RQGAAKTELC NKWERGACPY GARGGFAHGL QELRPVIRHP RYKTLPCQMF AAASGCPYGH  420
RCHFRHSPLR AAAAESFCY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A4e-163664281174Tristetraproline
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880078.10.0putative zinc finger CCCH domain-containing protein 21
SwissprotQ10MN80.0C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLB8AM340.0B8AM34_ORYSI; Uncharacterized protein
STRINGONIVA02G38660.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.13e-31C3H family protein