PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA010986-PA
Common NameOsI_11012
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 370aa    MW: 40688.4 Da    PI: 10.1512
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA010986-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.46.9e-05226269654
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++  ++R +++ +++  L++l+ +      +K + a++L +A  +I++L
  BGIOSGA010986-PA 226 KATCKKRSQKLGDRITALQQLVSPY-----GKTDTASVLHEAAACIRQL 269
                       56669******************99.....9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.702220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-6226278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-9230280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MVIASNKHEL MKYLSLTLER LQKQQLCRWI RHDDLDMLTD ELERKRYRTL ILMADTFLAN  60
DLRQFPSAKR KASLYTSTLA NIFILMLKVS SVAVKCEASN SPSTTVGFDR MIAADYDLFH  120
HMSFSPSLQN LQSPTFFTTR SSESYLGESS IYGGGARPAL AQFSYSQPIA ATSAAHLVRW  180
TAAGEPMTGD GGFRSSKRLK TATTATTQPP RHGVKCHAKP RNQTTKATCK KRSQKLGDRI  240
TALQQLVSPY GKTDTASVLH EAAACIRQLH QQIQILTAPY PGTSSSSASS QQQVVFSVLE  300
SCSHVMSFFT AIATVLWLQD AGGGGGTATE LRRRGLCVAA LSPAVVSLAA EGGRRRTDVE  360
DQKRIWFSNQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0839421e-163AC083942.8 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence.
GenBankAC1370691e-163AC137069.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence.
GenBankAP0149591e-163AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-163CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630126.11e-159transcription factor bHLH110 isoform X1
RefseqXP_015630127.11e-159transcription factor bHLH110 isoform X1
TrEMBLB8AL350.0B8AL35_ORYSI; Uncharacterized protein
STRINGOBART03G12630.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37582426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.15e-17bHLH family protein