PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA002005-PA

Common Name

OsI_01152

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Nin-like

Protein Properties

Length: 353aa MW: 38458.7 Da PI: 9.547

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA002005-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	71.1	1.5e-22	40	85	4	49
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49 ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rk+ BGIOSGA002005-PA 40 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRSHGIVRWPYRKL 85 6899*****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.79	23	108	IPR003035	RWP-RK domain
Pfam	PF02042	9.9E-21	41	85	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MASTAQPQQQ QEQQPVAAAA VPTPAPPASE AQPQKPTRVS LSYEEISKLF SLPIAEAASI 60 LGVCTSVLKR ICRSHGIVRW PYRKLLTELL LRNKRPSSEA SITAPVASGM HLVRALIENW 120 RWQPLPWRKQ TEDMLVSGKS GDDTKNAERE KAKGLLEISK VAKQKALSAS GLSTVRFPRS 180 GKISTGKFEG RTSLTPRKTK CVGWISILSY GTQTKGIPNY MDDFKYGFPS SGLSLQTMKW 240 WGTDSHTETT PAKDDNGEAP ESANEASKGM TDDELDWGAD EAEAEADADS AITTEPSAQL 300 CSLRRKAVDD GRKLLTGKSC GGLELCRLNK RQKMALAQVF GASLPEQLRS KLG

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MASTAQPQQQ QEQQPVAAAA VPTPAPPASE AQPQKPTRVS LSYEEISKLF SLPIAEAASI  60
LGVCTSVLKR ICRSHGIVRW PYRKLLTELL LRNKRPSSEA SITAPVASGM HLVRALIENW  120
RWQPLPWRKQ TEDMLVSGKS GDDTKNAERE KAKGLLEISK VAKQKALSAS GLSTVRFPRS  180
GKISTGKFEG RTSLTPRKTK CVGWISILSY GTQTKGIPNY MDDFKYGFPS SGLSLQTMKW  240
WGTDSHTETT PAKDDNGEAP ESANEASKGM TDDELDWGAD EAEAEADADS AITTEPSAQL  300
CSLRRKAVDD GRKLLTGKSC GGLELCRLNK RQKMALAQVF GASLPEQLRS KLG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.1779	0.0	callus\| leaf\| panicle\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32969002	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK058984	0.0	AK058984.1 Oryza sativa Japonica Group cDNA clone:001-020-E04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015625714.1	1e-156	uncharacterized protein LOC4326758
TrEMBL	B8ABT8	0.0	B8ABT8_ORYSI; Uncharacterized protein
STRING	OPUNC01G09100.1	1e-159	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6705	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	2e-09	RWP-RK domain-containing protein