PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.UIF5W

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bZIP

Protein Properties

Length: 456aa MW: 50968.9 Da PI: 6.8322

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.UIF5W	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31	5.7e-10	168	208	3	40
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLea 40 + k rr+++NReAAr+sR+RKka++++Le+ + ++Le+ Araip.UIF5W 168 DQKTLRRLAQNREAARKSRLRKKAYVQQLENsrvRLAQLEQ 208 56889*************************83334444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.0E-7	162	212	No hit	No description
SMART	SM00338	4.4E-5	166	230	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.335	168	212	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.5E-7	169	209	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.98E-22	170	222	No hit	No description
SuperFamily	SSF57959	2.01E-6	170	213	No hit	No description
PROSITE pattern	PS00036	0	173	188	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.6E-30	255	329	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MQRFKPTTES PPSHYSHSLF HLRGDDTTTT PNPTTRLTDS DLAVALVFQQ QHYHHAFDLT 60 STSPPFTAKF NNVAVASSNL QYGTFNNNLA SSGCYVETGQ QQQQQHMFQQ KGHFETRSES 120 AMADNSQQTD DASTDIDTDD KTHCNNRAGN GELVVVDSND QTKLKHEDQK TLRRLAQNRE 180 AARKSRLRKK AYVQQLENSR VRLAQLEQEL QRARQQGVFA ATGTVGDHAR AVVGNGALAF 240 DMDYARWVDE HQRLISDLRS AVNSQMGDNE LNLLVDGVLA HHDELFRLKT IGAKADVFHI 300 LSGTWKTPAE RCFMWLGGFR PSELLKIVRN HLEPLTDEQL MGIYNLQQSS QQAEDALSQG 360 MEALHQSLSE TLSSTSLGPT SSGNVAQYMG LMAIAMGKLA TLESFLHQAD LLRQQALQQL 420 QRILATHQAA RALLVINDYI SRLRALSSLW LACPKE

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MQRFKPTTES PPSHYSHSLF HLRGDDTTTT PNPTTRLTDS DLAVALVFQQ QHYHHAFDLT  60
STSPPFTAKF NNVAVASSNL QYGTFNNNLA SSGCYVETGQ QQQQQHMFQQ KGHFETRSES  120
AMADNSQQTD DASTDIDTDD KTHCNNRAGN GELVVVDSND QTKLKHEDQK TLRRLAQNRE  180
AARKSRLRKK AYVQQLENSR VRLAQLEQEL QRARQQGVFA ATGTVGDHAR AVVGNGALAF  240
DMDYARWVDE HQRLISDLRS AVNSQMGDNE LNLLVDGVLA HHDELFRLKT IGAKADVFHI  300
LSGTWKTPAE RCFMWLGGFR PSELLKIVRN HLEPLTDEQL MGIYNLQQSS QQAEDALSQG  360
MEALHQSLSE TLSSTSLGPT SSGNVAQYMG LMAIAMGKLA TLESFLHQAD LLRQQALQQL  420
QRILATHQAA RALLVINDYI SRLRALSSLW LACPKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.UIF5W

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016174122.1	0.0	transcription factor TGA2.3-like isoform X1
Refseq	XP_025679741.1	0.0	transcription factor TGA2.3-like
Swissprot	Q9SX27	1e-155	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A444XUS0	0.0	A0A444XUS0_ARAHY; Uncharacterized protein
STRING	XP_007142889.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6022	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-115	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]