PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.U6RZ5
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 317aa    MW: 35730.4 Da    PI: 5.908
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.U6RZ5genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.9e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+ +++++G+ +W+  +r  g+ R++k+c++rw++yl
      Araip.U6RZ5 14 KGAWTPEEDSKLIAYITRYGSWNWRQLPRFAGLARCGKSCRLRWLNYL 61
                     79********************************************97 PP
2Myb_DNA-binding50.83.8e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++++v  +k+ G++ W+ Ia+ ++ gRt++++k++w++
      Araip.U6RZ5  67 RGNYTQEEEDIIVTMHKKIGNK-WSVIASNLP-GRTDNDIKNHWHS 110
                      899*******************.*********.***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.84961IPR017930Myb domain
SuperFamilySSF466893.95E-2911108IPR009057Homeodomain-like
SMARTSM007172.3E-101363IPR001005SANT/Myb domain
PfamPF002491.5E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-231568IPR009057Homeodomain-like
CDDcd001671.22E-81661No hitNo description
PROSITE profilePS5129424.01362116IPR017930Myb domain
SMARTSM007171.9E-1566114IPR001005SANT/Myb domain
PfamPF002494.6E-1467110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-2469115IPR009057Homeodomain-like
CDDcd001674.97E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MARTRCVDKS GMKKGAWTPE EDSKLIAYIT RYGSWNWRQL PRFAGLARCG KSCRLRWLNY  60
LRPNIKRGNY TQEEEDIIVT MHKKIGNKWS VIASNLPGRT DNDIKNHWHS SLKRRSHRRN  120
TRQKVKATAA ATAPAAAVAA VNTTTNPNIN NNASLQYSPQ TSSDTVSVPL SPQLSSAIIT  180
TNNHNENNSD YFDDIDFLNY YTQHAIENLW SETFLAEQID NCNRGFGSSD TTNTQISDSS  240
ELLSPQSSSL SSAENNDNLF TFAETTATAF DEEFWTEHYA VDLSCVPNEL LTTSVDPYVC  300
PVAVYDDLDL WTQSNFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-29141157107B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112116KRRSH
Functional Description ? help Back to Top
Source Description
UniProtPlays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function (PubMed:9681014). May play a role in tolerance to boric acid (PubMed:16861809). {ECO:0000269|PubMed:16861809, ECO:0000269|PubMed:9681014}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.U6RZ5
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), drought, light and wounding in leaves. Down-regulated by drought and ABA in roots. {ECO:0000269|PubMed:9681014}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016169531.10.0transcription factor MYB14-like
RefseqXP_025674013.20.0transcription factor MYB30
SwissprotQ9LNC95e-54MYB13_ARATH; Transcription factor MYB13
TrEMBLA0A444Y6J10.0A0A444Y6J1_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.18e-54myb domain protein 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]