PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.U6PZK
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 307aa    MW: 32050.1 Da    PI: 10.1888
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.U6PZKgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.9e-172870347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     ++T+eEd+ +++a++++G++ W+tIar +  gRt++ +k++w++ 
      Araip.U6PZK 28 AFTPEEDDTIIRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 70
                     79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.1942175IPR017930Myb domain
SMARTSM007172.0E-142573IPR001005SANT/Myb domain
SuperFamilySSF466891.42E-142575IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-202674IPR009057Homeodomain-like
PfamPF002491.2E-142870IPR001005SANT/Myb domain
CDDcd001671.15E-112871No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MPRGVGGTGS VQLYPKSQAN RFPGRHRAFT PEEDDTIIRA HARFGNKWAT IARLLSGRTD  60
NAIKNHWNST LKRKCASMGP IDDPHFAQPL KRSVSAGAAV PVSTGLYMNP PTPGSPSGSD  120
VSESSVPAAS TSHVFRPVPR AGGVVPPVET TSSSYDPPTS LSLSLPGVDS NSEVSNRGNE  180
PSPHSAPPLT AIPLLPIMSA AVSATVAAVP AVTATAPGTA PLAAQPLQQI RDPSAVAAVP  240
KQNNGAAPFN FSAELLAVMQ DMIRKEVRSY MAGLEQQSNN NGMCFQAADG GFRNASVKRI  300
GISRIDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mbj_A1e-172574251MYB PROTO-ONCOGENE PROTEIN
1mbk_A1e-172574251MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.U6PZK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2086740.0KF208674.1 Arachis hypogaea putative MYB-related protein 20 (MYB20) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016201689.10.0transcription factor MYB44
RefseqXP_025652495.10.0transcription factor MYB44
TrEMBLA0A444ZAD40.0A0A444ZAD4_ARAHY; Uncharacterized protein
STRINGGLYMA01G39740.21e-112(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-38myb domain protein 73