PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.TY0LX

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 319aa MW: 35601.9 Da PI: 4.9367

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.TY0LX	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.7	1.7e-27	147	233	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA++vGF vr+sk ++s+ +++ + r fvC+keg+r ++k++ + r+raetr+gCka+++v+k k+g w+vt++++eH+H+la Araip.TY0LX 147 FYNAYATSVGFIVRVSKLSRSRIDNSAIGRIFVCNKEGYRMTDKRE--NVIRQRAETRVGCKAMIMVRKVKSGSWVVTRFVKEHTHPLA 233 ****************************************9988..9999*********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-25	147	233	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MPRIPPILFL FYFAVFTLQL LTQAVSRSVF YVNLILMEVE IDGSNNGEAI ENAAMADDCS 60 TDEGNNADEA NNADEGNNAD EGNNGDDGNN IDGRAIVPVQ SQGQDVTQVS AGGAITLAVP 120 TLPVPIVSPV EPYVGQEFES EAEAHAFYNA YATSVGFIVR VSKLSRSRID NSAIGRIFVC 180 NKEGYRMTDK RENVIRQRAE TRVGCKAMIM VRKVKSGSWV VTRFVKEHTH PLAGPGGGRR 240 DFIYEQYPGE RDRIRELNQQ LTAEKKRSAT YKRHLELILE HIDEYNESLS KKIQHIVDNV 300 KEMESKEEQS QLNFQLATL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.TY0LX

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016187125.1	0.0	protein FAR1-RELATED SEQUENCE 4
Refseq	XP_025642171.1	0.0	protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A445E424	0.0	A0A445E424_ARAHY; Uncharacterized protein
STRING	XP_007150433.1	1e-110	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-91	FAR1 family protein