PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.TD5ZM
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 297aa    MW: 34530.8 Da    PI: 6.1813
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.TD5ZMgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding391.8e-121257146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W+ eEde l + v+++G ++W++I ++  + Rt+k+c++rw +
      Araip.TD5ZM 12 KGPWSREEDEVLQEHVNKYGARDWSSIRSKGLLPRTGKSCRLRWVN 57
                     79*************************8876677**********87 PP
2Myb_DNA-binding452.5e-1468108345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++T+eE++l +++  q+G++ W++Ia ++  gRt++++k++w 
      Araip.TD5ZM  68 KFTEEEEKLVIELQGQFGNK-WAKIATYLE-GRTDNDVKNFWS 108
                      79******************.*********.***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.629759IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-19959IPR009057Homeodomain-like
SuperFamilySSF466892.4E-2810107IPR009057Homeodomain-like
SMARTSM007175.8E-121161IPR001005SANT/Myb domain
CDDcd001671.83E-111459No hitNo description
PfamPF139213.5E-111564No hitNo description
PROSITE profilePS5129420.04660115IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.6E-1760113IPR009057Homeodomain-like
SMARTSM007171.1E-1165113IPR001005SANT/Myb domain
CDDcd001673.99E-1068107No hitNo description
PfamPF002498.5E-1368108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MERGFDRRYI KKGPWSREED EVLQEHVNKY GARDWSSIRS KGLLPRTGKS CRLRWVNKLR  60
PNLKIGCKFT EEEEKLVIEL QGQFGNKWAK IATYLEGRTD NDVKNFWSSR RKRIERMLRK  120
PSITSSKMQN KNKGKVPLSQ VQFEEVSSNK PEENIPCGNY LPYYTAPYMG NTEEFKMVNL  180
PDLTKPNHQN LESDINTSSQ AFEATPLHVV PSFESSTTEY TFPQIPNEPQ LEFPVFPEPI  240
DDPYFFDMLE QKSVQNKIGT TVGMDGKPQN ESAKCFFEDI PTEIFEYFDH TPTSSDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-261011325126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.TD5ZM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016168884.10.0myb-related protein 305-like
RefseqXP_025670618.10.0transcription factor DUO1-like
SwissprotQ0JB893e-63MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBLA0A444XYM60.0A0A444XYM6_ARAHY; Uncharacterized protein
STRINGXP_007133863.11e-113(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36933164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-62MYB family protein
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]