PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.T1CBQ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 146aa    MW: 17362.9 Da    PI: 4.5728
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.T1CBQgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.41.8e-1189133146
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekk 46 
                  +fYn+YA++ GFs rk++++ks r g  + ++fvC +eg+r +++ 
  Araip.T1CBQ  89 EFYNRYARTRGFSARKNRTRKS-RAGALKLKNFVCHREGFRPPNNY 133
                  6*******************99.7777**************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-889132IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MGQEFSHEGV NSEHTSYDQY EQEEEKHEEI DVDYMDEDDT NVEPMFDYHG FDEGYNIDSL  60
EDIGMIEFWN IRDEDVCHFH FSDVDIAFEF YNRYARTRGF SARKNRTRKS RAGALKLKNF  120
VCHREGFRPP NNYGIGNLKR KPTPET
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.T1CBQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016182503.11e-106protein FAR1-RELATED SEQUENCE 11-like
RefseqXP_016182517.11e-106protein FAR1-RELATED SEQUENCE 11-like
RefseqXP_020970962.11e-106protein FAR1-RELATED SEQUENCE 11-like
RefseqXP_020970963.11e-106protein FAR1-RELATED SEQUENCE 11-like
RefseqXP_025631845.11e-106protein FAR1-RELATED SEQUENCE 11
RefseqXP_025631846.11e-106protein FAR1-RELATED SEQUENCE 11
RefseqXP_025631848.11e-106protein FAR1-RELATED SEQUENCE 11
RefseqXP_025631849.11e-106protein FAR1-RELATED SEQUENCE 11
RefseqXP_025631850.11e-106protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A445CDK21e-98A0A445CDK2_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2365423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.13e-09FAR1-related sequence 10