PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.R5GXF

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 576aa MW: 66170.8 Da PI: 7.8809

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.R5GXF	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.2	1.5e-19	107	196	1	89
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fY +YAk+vGF +r+++++ k+++ +++ + Cs+eg+re++ k+ + r + t gCka++ v +++ +++w+v+klel+H+H++ Araip.R5GXF 107 EFYANYAKKVGFVTRIRNTNFDktrKDSKIPVNQSLHCSREGYRESRVKA---ATRVKRITTAGCKARMYVMLDRqKDNWMVSKLELKHTHPC 196 6***********999887664445555668999********999...888889999******9998*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-17	107	197	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.234	356	394	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence Send to blast
MEQAICEGAS YGTAYDDSDQ YNSCNVNVPS LSEDDTQHVD KIICMFDVEF LTQISFVGRI 60 GKESGSVIEV VDNAMAVNHE LPDHTGIPLD EIPYIGLRFV SLQRAQEFYA NYAKKVGFVT 120 RIRNTNFDKT RKDSKIPVNQ SLHCSREGYR ESRVKAATRV KRITTAGCKA RMYVMLDRQK 180 DNWMVSKLEL KHTHPCSAKQ AVHYTEYKEL TMHANGCVME SLYDLYDERR MWVPIYFQGM 240 RSTQRSESMH AFYGGYLHFK SGLIQFVHEY DNVLGNKEQK ELEDDAADAK GVVPCSSSTT 300 IERQFQREYT TSKFREEQQE FRKKGDCLVR GATHEGNLFY LIVKEQYILY REPRSWNNIV 360 EFDPLTHKIR CECNMFASRG ILCCHCLDVY FYYGVDRVPS CYVLPRWSKN VQRKHTFIKS 420 SHDEKRSDES HNLFRRLCTH FFNVAQEFIT CEEEAAMLNS GLDELRAKLV DYRVNLGSRS 480 VPNTDNNMVT QSDTACVASD IQSPSKVATK GRPRLKKLGS ELDTSIKRYM RRKKNNPPQE 540 NNGAINPNIV AVPALSTNES HGNGGFLSLL HSFLHS

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence Send to blast

MEQAICEGAS YGTAYDDSDQ YNSCNVNVPS LSEDDTQHVD KIICMFDVEF LTQISFVGRI  60
GKESGSVIEV VDNAMAVNHE LPDHTGIPLD EIPYIGLRFV SLQRAQEFYA NYAKKVGFVT  120
RIRNTNFDKT RKDSKIPVNQ SLHCSREGYR ESRVKAATRV KRITTAGCKA RMYVMLDRQK  180
DNWMVSKLEL KHTHPCSAKQ AVHYTEYKEL TMHANGCVME SLYDLYDERR MWVPIYFQGM  240
RSTQRSESMH AFYGGYLHFK SGLIQFVHEY DNVLGNKEQK ELEDDAADAK GVVPCSSSTT  300
IERQFQREYT TSKFREEQQE FRKKGDCLVR GATHEGNLFY LIVKEQYILY REPRSWNNIV  360
EFDPLTHKIR CECNMFASRG ILCCHCLDVY FYYGVDRVPS CYVLPRWSKN VQRKHTFIKS  420
SHDEKRSDES HNLFRRLCTH FFNVAQEFIT CEEEAAMLNS GLDELRAKLV DYRVNLGSRS  480
VPNTDNNMVT QSDTACVASD IQSPSKVATK GRPRLKKLGS ELDTSIKRYM RRKKNNPPQE  540
NNGAINPNIV AVPALSTNES HGNGGFLSLL HSFLHS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.R5GXF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016195753.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_025647923.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A445E201	0.0	A0A445E201_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17996	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	7e-22	FAR1-related sequence 6