PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.Q65SS | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 724aa MW: 79025.4 Da PI: 5.7391 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.3 | 8.7e-21 | 80 | 135 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k Araip.Q65SS 80 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 135 678899***********************************************999 PP | |||||||
2 | START | 150.8 | 1.2e-47 | 299 | 490 | 4 | 175 |
HHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT. CS START 4 eeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg. 88 ++a++elvk+a++ ep+W +s e +n +e++++f+ + +ea+r++g+v+ ++ lve+l+d +e + ++a+ +t+evis+g Araip.Q65SS 299 LAAMDELVKMAQSCEPLWIRSLeiggrEVLNHEEYIRTFPNP-CialrtnsFVSEASRETGLVIINSLALVETLMDAAEMFPCMIARTSTTEVISNGi 395 789************************9***********664.259999999********************************************** PP .....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS START 89 .....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175 galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d ++ ++ + +v +++lpSg+++++++ng+skvtwveh+++++r Araip.Q65SS 396 ngsrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDAIRETSSagAPTFVNCRRLPSGCIVQDMPNGYSKVTWVEHAEYEER 490 ****************************************************9999999*********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.71E-21 | 62 | 137 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-22 | 65 | 137 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.556 | 77 | 137 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.8E-17 | 78 | 141 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.48E-18 | 79 | 137 | No hit | No description |
Pfam | PF00046 | 2.5E-18 | 80 | 135 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 112 | 135 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 31.391 | 287 | 507 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.12E-25 | 288 | 488 | No hit | No description |
CDD | cd08875 | 2.39E-94 | 291 | 490 | No hit | No description |
SMART | SM00234 | 1.4E-24 | 296 | 519 | IPR002913 | START domain |
Pfam | PF01852 | 7.2E-39 | 299 | 490 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.81E-19 | 527 | 717 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 724 aa Download sequence Send to blast |
MFNSPGLSLA LQQTNLDGQG DVNNNNIMGS ENNNNNYEGS NGGLRRSREE EHESRSGSDN 60 MDGASGDEQD AADNNNPKRK KRYHRHTPQQ IQELESLFKE CPHPDEKQRL ELSKRLCLET 120 RQVKFWFQNR RTQMKTQLER HENTLLRQEN DKLRAENMSI RDAMRNPMCS NCGGPAIIGE 180 LSLEEQHLRI ENARLKDELD RVCALAGKFL GRPISSMGGP HPLPNSSLEL GVGNNNNGYG 240 CNLSINVPNS LPLGPEFGVN LSSPLGMVSG PAITRPQPSA VVGGFDRSME RSMLLELGLA 300 AMDELVKMAQ SCEPLWIRSL EIGGREVLNH EEYIRTFPNP CIALRTNSFV SEASRETGLV 360 IINSLALVET LMDAAEMFPC MIARTSTTEV ISNGINGSRN GALQLMHAEL QVLSPLVPVR 420 EVNFLRFCKQ HAEGVWAVVD VSIDAIRETS SAGAPTFVNC RRLPSGCIVQ DMPNGYSKVT 480 WVEHAEYEER ESLVELWHGL RRPAVDRHPT APVRVPRHPH CARDPGEPPG IVLSAATSVW 540 LPVSPQRLFD FLRDERLRSE WDILSNGGPM QEMAHIAKGQ DHGNCVSLLR AGAINSNQSS 600 MLILQETCID AAGSLVVYAP VDIPAMHVVM NGGDSAYVAL LPSGFAIVPD GPGPRGAQNG 660 GAEANGGDDL GGGARGSGSL LTVAFQILVN SLPTAKLTVE SVETVNNLIS CTVQKIKAAL 720 RCES |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.Q65SS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020991942.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | M1CNN2 | 0.0 | M1CNN2_SOLTU; Uncharacterized protein | ||||
STRING | cassava4.1_001764m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1192 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.2 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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