PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.PY013
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 273aa    MW: 31707.7 Da    PI: 8.7584
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.PY013genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.31.6e-154841290
         FAR1 12 FsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                 F vrk+k +++ +n+ +t+++fvC ++g+r+ +  +   +++r+++aetr+gC+a+++v+ ++ +g+w +  +++  nH++ 
  Araip.PY013  4 FAVRKNKIQRNVKNE-VTQQEFVCFRQGSRDIRFVNdgLRQNREPKAETRCGCEAEMRVHVHSeSGRWIILYFQEVYNHKFL 84
                 999999999995555.***************998877789999******************999***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-12484IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.237184232IPR007527Zinc finger, SWIM-type
SMARTSM005757.3E-4207234IPR006564Zinc finger, PMZ-type
PfamPF044348.7E-6208231IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MNDFAVRKNK IQRNVKNEVT QQEFVCFRQG SRDIRFVNDG LRQNREPKAE TRCGCEAEMR  60
VHVHSESGRW IILYFQEVYN HKFLEDRLTC MLSGHRKMDV VIVKQMNMML KVGIILYALH  120
IQRRSGKAHS DLLSVVGDSP LHDLEMSASN KLTKEIFFLF SPMLFRTCTL KVQTHALSQT  180
CDIYTLSRSI NTRKEWQVGR YCDNNIFKCS CLRMESLGIP CDHIIAVLIH VQLSDTPDSL  240
VLDRWSKNAR SKVRAFVEKA PFCWDSTITL DAE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.PY013
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025702549.12e-67protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445AFH80.0A0A445AFH8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3613639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.15e-09FAR1-related sequence 11