PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.PU0FS
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 462aa    MW: 53487.3 Da    PI: 6.4575
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.PU0FSgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.16.3e-2392183190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  +fYn YAk+ GFs rks+ +++ +n+ +t++ fvC ++g+r+  +++  ++ +r+++++tr+gC a+++v+ ++ +g+w v  ++++HnHe+ 
  Araip.PU0FS  92 SFYNLYAKMNGFSARKSRIRRNVNND-VTQQAFVCFRQGFRDLCSDNdaARCKREPKPTTRCGCGAEMRVHIHEeTGRWIVRYFQEKHNHEML 183
                  5********************96655.***************98888667778999***************9999***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-2092183IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.645210248IPR007527Zinc finger, SWIM-type
SMARTSM005750.0018223250IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MAGLEDFCAE QEAPLYSEGM NVLHDLDPQE RTLEDVSDCV SDSDEYFGDN FYDDWDNRAI  60
NGIADLQTVK FKELTADQIR RLHFPDRSVA FSFYNLYAKM NGFSARKSRI RRNVNNDVTQ  120
QAFVCFRQGF RDLCSDNDAA RCKREPKPTT RCGCGAEMRV HIHEETGRWI VRYFQEKHNH  180
EMLDDMLTFM LPGHRKMNSA AIDQMNMMLK VVALSHYPNE EIYKCSCMRM ESLGIPCDHV  240
VAVLVHLDAT KLPKSLILDR WSKNARSRVH AFMDNGPFCW DSMVTCCNWM LSDLCRELCL  300
LGSAGDAEFS ELRDKFQNEI VLLKEQKKCM QADRERTEPH AESTTLEGCI RNPLMVRHSK  360
RQRRGSMSHS SLRGVKRCGV CRRVGHNRVS CALNSQRCRH GHRRYSNALE ENIHHVESPQ  420
DDCYRPDWTD VEYTSFFWDG DGGSDNFDME IPVSDPYYSS QP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350363RNPLMVRHSKRQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.PU0FS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A444ZLL50.0A0A444ZLL5_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3613639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.12e-14FAR1-related sequence 10