PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.NB3FG

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 269aa MW: 31141.3 Da PI: 9.2653

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.NB3FG	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.5	1.7e-26	109	195	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA++vGF vr+sk ++s+ +++ + + fvC+keg+r ++k++ + r+r++tr+gCka+++v+k k+g w+vt++++eH+H la Araip.NB3FG 109 FYNAYATSVGFIVRVSKLSRSRIDNSAIGQIFVCNKEGYRMTDKRE--NVIRQRVKTRVGCKAMIMVRKVKSGSWVVTRFVKEHTHLLA 195 ****************************************9988..9999********************************885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-24	109	194	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MIWRSLLLAI CDRLTKARKR SSEEELLADI LDSPELTRSC SNLERRDILG NTIHQFPDSK 60 SQSFENLQEL TVGKVAANLE SPRSRIYRNS PVEAYVGQEF ESEAEAHAFY NAYATSVGFI 120 VRVSKLSRSR IDNSAIGQIF VCNKEGYRMT DKRENVIRQR VKTRVGCKAM IMVRKVKSGS 180 WVVTRFVKEH THLLAGPGGG RRDFIYEQYP GERYRIRELN QQLTYSREKE HIDEYNESLS 240 KKIQHIVDNV KEMESKEEQS QLNFQLATL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.NB3FG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025679133.1	1e-145	protein FAR1-RELATED SEQUENCE 4-like
TrEMBL	A0A444YNU1	0.0	A0A444YNU1_ARAHY; Uncharacterized protein
STRING	XP_007131945.1	6e-82	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	9e-73	FAR1 family protein