PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.N7NRE
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 310aa    MW: 35873.3 Da    PI: 9.3149
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.N7NREgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.68.7e-2313103290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  fY+ YAk+ GF+vrk+k  ++ rn+ +t+++fvC ++ +r   + +  ++++r+++aetr+gC+a+++v+ ++ +g+w ++ ++  HnHel 
  Araip.N7NRE  13 FYSLYAKMNGFTVRKNKIWRNVRNE-VTQQEFVCFRHRFRGIGSVNdgKRQKREPKAETRCGCEAEMRVHVHSdSGRWIISYFQDVHNHELL 103
                  9********************7776.*************998777766799999*****************999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.2E-2013103IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.126220268IPR007527Zinc finger, SWIM-type
SMARTSM005750.0017243270IPR006564Zinc finger, PMZ-type
PfamPF044344.4E-5244267IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MYHFSDRSVA FLFYSLYAKM NGFTVRKNKI WRNVRNEVTQ QEFVCFRHRF RGIGSVNDGK  60
RQKREPKAET RCGCEAEMRV HVHSDSGRWI ISYFQDVHNH ELLDDRLTFM LPGHRKMDAA  120
VVEQMNMMLR VGIKTPHIYS SFVQTVGGFQ NLPFLKGDMS REAHSDMLSV VGEPSPFHDL  180
ERSAVKKLTR AIFLNFRPML FYACTLKVRT HTWSQTSDTF TLSRSANARR EWQVCHYGDS  240
NNFKCSCLRM ESLGIPCDHI VAVLVHLEMT DIPDSLVLDR WSKSARSKVR AFVEKGPFCW  300
DSTIIAAIGC
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.N7NRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A445ARC31e-180A0A445ARC3_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3613639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.12e-16FAR1-related sequence 10