PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.LC4KN | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 264aa MW: 29491.4 Da PI: 6.885 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.6 | 3.8e-12 | 78 | 123 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er RR++i + f L l+P + kK++Ka++L A++Y+k+Lq Araip.LC4KN 78 HIIAERMRREKISQQFIALSALIPGL-----KKMDKATVLGDAIKYVKQLQ 123 899***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.589 | 73 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.76E-17 | 77 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.15E-11 | 78 | 127 | No hit | No description |
Pfam | PF00010 | 1.1E-9 | 78 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.9E-17 | 78 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.7E-14 | 79 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MISTEESWTT WLCDLEEEDY SFINGIIADP NNYSNSQMSN NDNERPSKLL KSTTPTPTRR 60 RRTGSAGTGR SPQHAHDHII AERMRREKIS QQFIALSALI PGLKKMDKAT VLGDAIKYVK 120 QLQEQVKVLE TESKRKSAES VVYVEKSEVC GEEDVSDTWS NSGGDGNSSY EVSKAVSRSV 180 LPEVEARVSE KNVLIRIHCE KHKGVLMHIL KLIDKLHLSV LNTTSLPFGT SIVDITVTAE 240 MDDKFSLSAK ELARNIRVGL LQSM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-13 | 77 | 151 | 8 | 80 | Transcription factor MYC2 |
5gnj_B | 1e-13 | 77 | 151 | 8 | 80 | Transcription factor MYC2 |
5gnj_E | 1e-13 | 77 | 151 | 8 | 80 | Transcription factor MYC2 |
5gnj_F | 1e-13 | 77 | 151 | 8 | 80 | Transcription factor MYC2 |
5gnj_G | 1e-13 | 77 | 151 | 8 | 80 | Transcription factor MYC2 |
5gnj_I | 1e-13 | 77 | 151 | 8 | 80 | Transcription factor MYC2 |
5gnj_M | 1e-13 | 77 | 151 | 8 | 80 | Transcription factor MYC2 |
5gnj_N | 1e-13 | 77 | 151 | 8 | 80 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.LC4KN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016201563.1 | 0.0 | transcription factor NAI1 | ||||
TrEMBL | A0A444ZAU1 | 1e-132 | A0A444ZAU1_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA01G40611.1 | 2e-90 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF455 | 34 | 164 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22760.1 | 8e-50 | bHLH family protein |