PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.L92K3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 917aa MW: 103992 Da PI: 6.7923 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 52.1 | 2.1e-16 | 489 | 565 | 1 | 76 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkw 76 +fYn+YA++ GFs rk++s+ks r g + ++fvC +eg+r +++ + +r++++etr+gC a ++++ + +g+w Araip.L92K3 489 EFYNRYARTRGFSARKNRSRKS-RAGALKLKNFVCHREGFRLQNSYCiGNLKRKPTPETRCGCSALMEIRVDApSGRW 565 6********************9.7777**************99988777899******************99888888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51375 | 5.853 | 290 | 320 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 0.66 | 297 | 319 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 9.021 | 321 | 351 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 3.3E-4 | 323 | 350 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 1.1E-6 | 323 | 350 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 7.432 | 355 | 390 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF03101 | 2.4E-13 | 489 | 565 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 10.262 | 629 | 677 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.001 | 652 | 679 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 917 aa Download sequence Send to blast |
MFTSAVKISI HVLPGNSLPP RVSRKTEGSI FAFSMTESAD RTFSAATFLG GDTDSSFLRV 60 CEEWRQTQGA AASDACCGGE SRRTRDRAEE EDEKLAFKGD WKPNSALPFL TKPYRYALQS 120 QFATIARTQN SLAASLSFIP ASAAAPCVRR RSLRPPPLPA SAAAPCVRRR SLRPPPLPAS 180 AAAPCVRRRS LRPPPLPASA AAPCVRRRSL RPPPLPASAA APCFRRRRAG LCLNAWRLRA 240 LIRIDPSGFL ETLLGNEFPG RTWMLIFTAE FENLKWSSEL VSLERPASWL EKVKTDLIDM 300 YAKCGSVRVA RALFEMLREE IVVSWNAIIT GYAMHGLAKE ALELFEVMRT EARPDLITFV 360 GVLAACSRGL LLNEGHAFYD MMMRDYGINP TVQHYTCMEV MGQEFSHEGV NSEHTSYDQY 420 EQEEEKYEEV DVDYMDEDDT SVELMFDYHG FDEGYNIDSL EDIGMIEFWN IRDEDVCHFH 480 FSDVDIAFEF YNRYARTRGF SARKNRSRKS RAGALKLKNF VCHREGFRLQ NSYCIGNLKR 540 KPTPETRCGC SALMEIRVDA PSGRWWKEVQ ADLASVNGRP SLQTCFQQLE RSAANVYTLS 600 IFHMFQPILV RAASMKVINM RQTGSYVIYS VALDRTPNET WRVFCCDIEM EFNCSCMRME 660 SFGIPCEHII CVLVHEDIEE LPRSLVLPRW TKTAKVSFQN ARGLHWDSLM LSQYGCLMDW 720 FRQLANFACR DNERFIFIRE MAMNLLKQFK EEDAAQKELV NDADSVRDGV QVDNSGAGLA 780 TNDLGHSMPR DPRKCRTKGG ASQFNKRKHR CGQCGMEGHN RTTCRVRRGI SQSEGWGNDS 840 DDHMNIEDDS LVYDENASYS SNEVMFFLEA IRMDERLSST LDQHLVCPIV TPSPMFVQKD 900 GNLRVLEEEG LAKASEF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 205 | 227 | RRRSLRPPPLPASAAAPCFRRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.L92K3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020979451.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_025652524.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A444Z547 | 0.0 | A0A444Z547_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF29177 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 7e-17 | FAR1-related sequence 3 |