PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.KWZ1G | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB | ||||||||
Protein Properties | Length: 172aa MW: 19838.9 Da PI: 11.4942 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.9 | 7.6e-11 | 24 | 60 | 11 | 48 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 l +v++ + W+ Ia+ +g gR +kqc++rw+++l Araip.KWZ1G 24 TLEALVNENKLKKWSQIAKLLG-GRNGKQCRERWHNHL 60 688999999999**********.*************97 PP | |||||||
2 | Myb_DNA-binding | 45.6 | 1.6e-14 | 115 | 160 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g WT++ d l +v++ + W+ Ia+ +g gR +kqc++rw+++l Araip.KWZ1G 115 GQWTPDQDMTLEALVNENKLKKWSQIAKLLG-GRNGKQCRERWHNHL 160 79*****************************.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.047 | 15 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.97E-13 | 22 | 68 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.5E-16 | 22 | 65 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-4 | 22 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.01E-9 | 22 | 60 | No hit | No description |
Pfam | PF00249 | 2.7E-9 | 23 | 60 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.927 | 109 | 164 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.08E-16 | 111 | 167 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-12 | 113 | 162 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-13 | 115 | 160 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 115 | 168 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.41E-12 | 117 | 160 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MLMRLPLATT FMVNGHRIRT CDMTLEALVN ENKLKKWSQI AKLLGGRNGK QCRERWHNHL 60 QPNLKLYFVI FYGAPLLVTE KDPRANANAR PRRRNHIRSQ RANANAPPTG NHIHGQWTPD 120 QDMTLEALVN ENKLKKWSQI AKLLGGRNGK QCRERWHNHL QPNLKKNSSA SG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 4e-15 | 19 | 168 | 11 | 112 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-15 | 19 | 168 | 11 | 112 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.KWZ1G |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020959242.1 | 2e-61 | transcription factor MYB118-like | ||||
Refseq | XP_025650997.1 | 2e-61 | transcription factor MYB118-like | ||||
TrEMBL | A0A444YZ43 | 4e-60 | A0A444YZ43_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA05G08761.1 | 1e-17 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14336 | 10 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27785.1 | 1e-19 | myb domain protein 118 |