PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.HA1UL | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C3H | ||||||||
Protein Properties | Length: 411aa MW: 45012.5 Da PI: 8.506 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.4e-11 | 55 | 81 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p Araip.HA1UL 55 PGEPDCSYYIRTGLCRFGATCRFNHPP 81 5789*********************97 PP | |||||||
2 | zf-CCCH | 32.7 | 1.3e-10 | 91 | 110 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCk+G++CkF+H++ Araip.HA1UL 91 YYLKTGTCKFGATCKFHHPR 110 8*****************96 PP | |||||||
3 | zf-CCCH | 37.2 | 5e-12 | 132 | 156 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ Araip.HA1UL 132 EAECAYYLRTGQCKFGNTCKFHHPQ 156 689********************97 PP | |||||||
4 | zf-CCCH | 38 | 2.8e-12 | 272 | 298 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ Araip.HA1UL 272 PGQPECQFYMKTGDCKFGAVCRFHHPR 298 5789*********************96 PP | |||||||
5 | zf-CCCH | 38.2 | 2.4e-12 | 318 | 344 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Araip.HA1UL 318 PGEPLCVFYSRYGICKFGPSCKFDHPM 344 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.2E-4 | 54 | 81 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.976 | 55 | 82 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-8 | 56 | 81 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-5 | 59 | 82 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.7E-4 | 60 | 80 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.45 | 83 | 110 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.493 | 91 | 111 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-8 | 91 | 110 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-4 | 91 | 110 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.159 | 129 | 157 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-5 | 129 | 156 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 131 | 157 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.1E-10 | 132 | 156 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-4 | 135 | 155 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 271 | 299 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-6 | 271 | 298 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.7E-9 | 273 | 298 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.55E-6 | 275 | 301 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-5 | 277 | 299 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.821 | 317 | 345 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-7 | 317 | 344 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-9 | 319 | 344 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 320 | 344 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-4 | 322 | 342 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MLQFPCPVKA SLKDGALYAT AMKLTCSYDI ISDAMWQMNL RSSETMEPGP YPEHPGEPDC 60 SYYIRTGLCR FGATCRFNHP PNRKLVETHI YYLKTGTCKF GATCKFHHPR DKAGIAGRVA 120 LNILGYPLRP NEAECAYYLR TGQCKFGNTC KFHHPQPSNM FSCLSHRSFS NNARSXSSSS 180 YIASPRWQGP SSYASLILPQ GVVSVPGWGA YNGQMGSDST QQSVGNGQTY ASSRQGESAN 240 AGSQGAYSQY RSGSVPVGFY ALQRENIFPE RPGQPECQFY MKTGDCKFGA VCRFHHPRER 300 LIPAPDCLLS PIGLPLRPGE PLCVFYSRYG ICKFGPSCKF DHPMGIFAYN MSTSPSADAS 360 GRRMLGSSSG TAALNLSPEG LVESGSAKPR RLSLSETRQL PSSDDNIDDE G |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.HA1UL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016194000.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like | ||||
Refseq | XP_025649601.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like | ||||
Refseq | XP_025696351.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A444ZR22 | 0.0 | A0A444ZR22_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA09G38650.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5321 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-148 | zinc finger protein 1 |