PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.GZ79T | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 278aa MW: 30955.4 Da PI: 6.3934 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00033 | 36 | 59 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+ F + +L++H++t H Araip.GZ79T 36 FPCTACGEIFQKPLLLEQHQSTkH 59 89*******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.369 | 36 | 64 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 38 | 59 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 3.55E-13 | 61 | 277 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.2E-5 | 62 | 181 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene3D | G3DSA:3.90.228.10 | 1.2E-4 | 211 | 277 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MNIPRRNLPG SLVRPESEIS GELDSGLFFP LRNDIFPCTA CGEIFQKPLL LEQHQSTKHA 60 VSELPGSDPG HNIVQIIFKS GWPEIRKFPT ITRILKIHNS QKILSRFEEY REAVKERAAL 120 HGGIMSTRRR DERCLADGNE LMRFHCSTFL CDLGLNGNSS ICSQQFCNIC GIIKSGFSPK 180 LDGISTLASS WRAHVSIPED IESEFGFMNV KRAMLVCRVI AGRIGSDSDE AEKEDGGSFD 240 SVMARGGDSG VYTRLDEEEL LVFNPRAVLP CFVIVYSV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.GZ79T |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016165436.1 | 0.0 | uncharacterized protein LOC107608029 | ||||
Refseq | XP_025626599.1 | 0.0 | uncharacterized protein LOC112720021 | ||||
TrEMBL | A0A445AMY1 | 0.0 | A0A445AMY1_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA18G07330.1 | 1e-161 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10668 | 29 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29660.1 | 1e-103 | C2H2 family protein |